Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs72696893	0.86[EUR][1000 genomes]
rs72698830	0.86[EUR][1000 genomes]
rs72698837	0.86[EUR][1000 genomes]
rs72698861	0.86[EUR][1000 genomes]
rs72698875	1.00[EUR][1000 genomes]
rs72698878	1.00[EUR][1000 genomes]
rs72698881	1.00[EUR][1000 genomes]
rs72700821	1.00[EUR][1000 genomes]
rs72700825	1.00[EUR][1000 genomes]
rs72700830	1.00[EUR][1000 genomes]
rs72700833	1.00[EUR][1000 genomes]
rs72700834	1.00[EUR][1000 genomes]
rs72700839	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700840	1.00[EUR][1000 genomes]
rs72700842	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700843	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700846	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700850	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72702533	1.00[EUR][1000 genomes]
rs72702562	1.00[EUR][1000 genomes]
rs72704647	1.00[EUR][1000 genomes]
rs7693814	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv881415	chr4:171694739-171842726	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881334	chr4:171713039-171842726	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521422	chr4:171808256-171824549	Enhancers ZNF genes & repeats Weak transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
5	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171809000-171813600	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search: