Variant report

Variant	rs72702562
Chromosome Location	chr4:171867500-171867501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs72696893	0.86[EUR][1000 genomes]
rs72698830	0.86[EUR][1000 genomes]
rs72698837	0.86[EUR][1000 genomes]
rs72698861	0.86[EUR][1000 genomes]
rs72698875	1.00[EUR][1000 genomes]
rs72698878	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72698881	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700821	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700825	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700830	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700833	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700834	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700839	0.87[EUR][1000 genomes]
rs72700840	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72700842	0.87[EUR][1000 genomes]
rs72700843	0.87[EUR][1000 genomes]
rs72700846	0.87[EUR][1000 genomes]
rs72700847	1.00[EUR][1000 genomes]
rs72700850	1.00[EUR][1000 genomes]
rs72702533	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704653	0.83[AMR][1000 genomes]
rs72704673	1.00[AMR][1000 genomes]
rs72706513	1.00[AMR][1000 genomes]
rs72706519	1.00[AMR][1000 genomes]
rs72706522	1.00[AMR][1000 genomes]
rs72706524	1.00[AMR][1000 genomes]
rs72706526	1.00[AMR][1000 genomes]
rs72706528	1.00[AMR][1000 genomes]
rs72706529	1.00[AMR][1000 genomes]
rs72706530	1.00[AMR][1000 genomes]
rs72706531	1.00[AMR][1000 genomes]
rs7693814	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024230	chr4:171830560-171915978	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1021182	chr4:171830560-171924702	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv880853	chr4:171842726-171939724	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv881662	chr4:171842726-171957000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171866000-171867600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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