Variant report

Variant	rs72704653
Chromosome Location	chr4:171900252-171900253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs72702533	0.83[AMR][1000 genomes]
rs72702562	0.83[AMR][1000 genomes]
rs72704647	0.83[AMR][1000 genomes]
rs72704673	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706513	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706519	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706522	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706524	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706526	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706528	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706529	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706530	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706531	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706554	0.87[EUR][1000 genomes]
rs72706581	0.87[EUR][1000 genomes]
rs72706585	0.87[EUR][1000 genomes]
rs72706586	0.87[EUR][1000 genomes]
rs72706587	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024230	chr4:171830560-171915978	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
4	nsv1021182	chr4:171830560-171924702	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv880853	chr4:171842726-171939724	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv881662	chr4:171842726-171957000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3401886	chr4:171880271-171913562	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	nsv1023543	chr4:171895573-171939724	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171893200-171901000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:171899800-171901000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr4:171900000-171900400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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