Variant report

Variant	rs72706524
Chromosome Location	chr4:171945207-171945208
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs28650805	0.86[EUR][1000 genomes]
rs72698878	0.83[AMR][1000 genomes]
rs72698881	0.83[AMR][1000 genomes]
rs72700821	0.83[AMR][1000 genomes]
rs72700825	0.83[AMR][1000 genomes]
rs72700830	0.83[AMR][1000 genomes]
rs72700833	0.83[AMR][1000 genomes]
rs72700834	0.83[AMR][1000 genomes]
rs72700840	0.83[AMR][1000 genomes]
rs72702533	1.00[AMR][1000 genomes]
rs72702562	1.00[AMR][1000 genomes]
rs72704647	1.00[AMR][1000 genomes]
rs72704653	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72704673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706513	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706519	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706528	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706554	1.00[EUR][1000 genomes]
rs72706581	1.00[EUR][1000 genomes]
rs72706585	1.00[EUR][1000 genomes]
rs72706586	1.00[EUR][1000 genomes]
rs72706587	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1018793	chr4:171808272-172395180	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv881662	chr4:171842726-171957000	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171942200-171946000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr4:171943000-171945800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:171944400-171946400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr4:171944600-171945800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:171944600-171945800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:171944600-171946000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:171944600-171946000	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr4:171944600-171949000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:171944800-171946000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:171944800-171946000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr4:171945200-171948000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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