Variant report

Variant	rs72700825
Chromosome Location	chr4:171793037-171793038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs72696893	0.86[EUR][1000 genomes]
rs72698830	0.86[EUR][1000 genomes]
rs72698837	0.86[EUR][1000 genomes]
rs72698861	0.86[EUR][1000 genomes]
rs72698875	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72698878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72698881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700830	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700839	0.87[EUR][1000 genomes]
rs72700840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72700842	0.87[EUR][1000 genomes]
rs72700843	0.87[EUR][1000 genomes]
rs72700846	0.87[EUR][1000 genomes]
rs72700847	1.00[EUR][1000 genomes]
rs72700850	1.00[EUR][1000 genomes]
rs72702533	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72702562	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704647	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704673	0.83[AMR][1000 genomes]
rs72706513	0.83[AMR][1000 genomes]
rs72706519	0.83[AMR][1000 genomes]
rs72706522	0.83[AMR][1000 genomes]
rs72706524	0.83[AMR][1000 genomes]
rs72706526	0.83[AMR][1000 genomes]
rs72706528	0.83[AMR][1000 genomes]
rs72706529	0.83[AMR][1000 genomes]
rs72706530	0.83[AMR][1000 genomes]
rs72706531	0.83[AMR][1000 genomes]
rs7693814	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881345	chr4:171673765-172228547	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv881415	chr4:171694739-171842726	Active TSS ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv881334	chr4:171713039-171842726	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:171790200-171793400	Weak transcription	HMEC	breast
2	chr4:171790200-171793600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:171790600-171793200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:171792400-171793800	Weak transcription	NHEK	skin
5	chr4:171793000-171793600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links