Variant report
| Variant | rs72698837 |
|---|---|
| Chromosome Location | chr4:171743036-171743037 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:171742755..171745728-chr4:171748600..171750384,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs55810366 | 1.00[ASN][1000 genomes] |
| rs72696893 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72698830 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72698861 | 1.00[EUR][1000 genomes] |
| rs72698875 | 0.86[EUR][1000 genomes] |
| rs72698878 | 0.86[EUR][1000 genomes] |
| rs72698881 | 0.86[EUR][1000 genomes] |
| rs72700821 | 0.86[EUR][1000 genomes] |
| rs72700825 | 0.86[EUR][1000 genomes] |
| rs72700830 | 0.86[EUR][1000 genomes] |
| rs72700833 | 0.86[EUR][1000 genomes] |
| rs72700834 | 0.86[EUR][1000 genomes] |
| rs72700840 | 0.86[EUR][1000 genomes] |
| rs72700847 | 0.86[EUR][1000 genomes] |
| rs72700850 | 0.86[EUR][1000 genomes] |
| rs72702533 | 0.86[EUR][1000 genomes] |
| rs72702562 | 0.86[EUR][1000 genomes] |
| rs72704647 | 0.86[EUR][1000 genomes] |
| rs7693814 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv881606 | chr4:171640683-171760509 | Active TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv881345 | chr4:171673765-172228547 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | nsv881415 | chr4:171694739-171842726 | Active TSS ZNF genes & repeats Enhancers Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv881334 | chr4:171713039-171842726 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:171741200-171744000 | Weak transcription | Stomach Mucosa | stomach |
