Variant report
| Variant | rs72696893 |
|---|---|
| Chromosome Location | chr4:171692146-171692147 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs72698830 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72698837 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72698861 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72698875 | 0.86[EUR][1000 genomes] |
| rs72698878 | 0.86[EUR][1000 genomes] |
| rs72698881 | 0.86[EUR][1000 genomes] |
| rs72700821 | 0.86[EUR][1000 genomes] |
| rs72700825 | 0.86[EUR][1000 genomes] |
| rs72700830 | 0.86[EUR][1000 genomes] |
| rs72700833 | 0.86[EUR][1000 genomes] |
| rs72700834 | 0.86[EUR][1000 genomes] |
| rs72700840 | 0.86[EUR][1000 genomes] |
| rs72700847 | 0.86[EUR][1000 genomes] |
| rs72700850 | 0.86[EUR][1000 genomes] |
| rs72702533 | 0.86[EUR][1000 genomes] |
| rs72702562 | 0.86[EUR][1000 genomes] |
| rs72981846 | 1.00[ASN][1000 genomes] |
| rs72981848 | 1.00[ASN][1000 genomes] |
| rs72981882 | 1.00[ASN][1000 genomes] |
| rs72981885 | 1.00[ASN][1000 genomes] |
| rs73868352 | 1.00[ASN][1000 genomes] |
| rs7693814 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv881606 | chr4:171640683-171760509 | Active TSS Enhancers Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv881345 | chr4:171673765-172228547 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 3 | esv275125 | chr4:171687307-171693080 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
| 4 | esv3508498 | chr4:171690271-171722702 | Enhancers Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv3508499 | chr4:171690271-171722702 | Active TSS Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:171691400-171692800 | Weak transcription | Placenta Amnion | Placenta Amnion |
