Variant report
| Variant | rs72706513 |
|---|---|
| Chromosome Location | chr4:171935084-171935085 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:171928561..171931104-chr4:171934815..171936372,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs28650805 | 0.86[EUR][1000 genomes] |
| rs72698878 | 0.83[AMR][1000 genomes] |
| rs72698881 | 0.83[AMR][1000 genomes] |
| rs72700821 | 0.83[AMR][1000 genomes] |
| rs72700825 | 0.83[AMR][1000 genomes] |
| rs72700830 | 0.83[AMR][1000 genomes] |
| rs72700833 | 0.83[AMR][1000 genomes] |
| rs72700834 | 0.83[AMR][1000 genomes] |
| rs72700840 | 0.83[AMR][1000 genomes] |
| rs72702533 | 1.00[AMR][1000 genomes] |
| rs72702562 | 1.00[AMR][1000 genomes] |
| rs72704647 | 1.00[AMR][1000 genomes] |
| rs72704653 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs72704673 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72706519 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72706522 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72706524 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72706526 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72706528 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72706529 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72706530 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72706531 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72706554 | 1.00[EUR][1000 genomes] |
| rs72706581 | 1.00[EUR][1000 genomes] |
| rs72706585 | 1.00[EUR][1000 genomes] |
| rs72706586 | 1.00[EUR][1000 genomes] |
| rs72706587 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv881345 | chr4:171673765-172228547 | Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018793 | chr4:171808272-172395180 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv880853 | chr4:171842726-171939724 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv881662 | chr4:171842726-171957000 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1023543 | chr4:171895573-171939724 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv968057 | chr4:171921670-171936643 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:171929000-171944400 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
