Variant report

Variant	rs72716408
Chromosome Location	chr14:66066001-66066002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65878369..65881220-chr14:66065484..66068700,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10143206	0.87[ASN][1000 genomes]
rs10145146	0.97[ASN][1000 genomes]
rs10148529	0.90[ASN][1000 genomes]
rs10483776	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1113962	0.81[ASN][1000 genomes]
rs11158603	0.97[ASN][1000 genomes]
rs11158604	0.93[ASN][1000 genomes]
rs1121885	0.90[ASN][1000 genomes]
rs12433597	0.86[ASN][1000 genomes]
rs12587057	0.97[ASN][1000 genomes]
rs17753508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2183277	0.86[ASN][1000 genomes]
rs2268956	0.92[ASN][1000 genomes]
rs2268959	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2300864	0.87[ASN][1000 genomes]
rs2411356	0.93[ASN][1000 genomes]
rs2898814	0.86[ASN][1000 genomes]
rs34640387	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34772005	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35949016	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3825639	0.86[ASN][1000 genomes]
rs60708728	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61987993	0.97[ASN][1000 genomes]
rs6573616	0.92[ASN][1000 genomes]
rs6573618	0.93[ASN][1000 genomes]
rs7140341	0.97[ASN][1000 genomes]
rs7144345	0.90[ASN][1000 genomes]
rs7144971	0.87[ASN][1000 genomes]
rs7147002	0.86[ASN][1000 genomes]
rs7158153	0.86[ASN][1000 genomes]
rs72714423	0.85[EUR][1000 genomes]
rs72714428	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72714433	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72714436	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72714439	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72714440	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72714442	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72714447	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72714460	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72714461	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72714468	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72714478	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72714482	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72714483	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72714484	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72714499	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72716407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72716418	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72716420	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72716421	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72716430	0.84[EUR][1000 genomes]
rs8019762	0.93[ASN][1000 genomes]
rs9323461	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66058200-66079000	Weak transcription	Primary T cells from cord blood	blood
2	chr14:66058600-66070600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:66059200-66082600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr14:66061800-66066200	Weak transcription	Fetal Intestine Small	intestine
5	chr14:66061800-66081800	Weak transcription	Dnd41	blood
6	chr14:66061800-66099000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:66062000-66082400	Weak transcription	Primary B cells from cord blood	blood
8	chr14:66065200-66066800	Enhancers	A549	lung
9	chr14:66065800-66066400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:66065800-66066600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr14:66066000-66066200	Enhancers	Fetal Intestine Large	intestine
12	chr14:66066000-66066400	Enhancers	Duodenum Mucosa	Duodenum
13	chr14:66066000-66071000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:66066000-66071200	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links