Variant report

Variant	rs10148529
Chromosome Location	chr14:66104703-66104704
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10083363	0.81[AFR][1000 genomes]
rs10131715	0.83[AMR][1000 genomes]
rs10142283	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10143206	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10144979	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10145146	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10150412	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10152007	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10873190	0.85[EUR][1000 genomes]
rs10873191	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1113962	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11158595	0.91[EUR][1000 genomes]
rs11158603	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11158604	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11158605	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11158606	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11158607	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1121885	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11629437	0.85[EUR][1000 genomes]
rs11844682	0.88[EUR][1000 genomes]
rs11848209	0.84[AFR][1000 genomes]
rs12433597	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12587057	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1889731	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs1953415	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1953418	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1956009	0.90[AFR][1000 genomes]
rs1956010	0.82[AMR][1000 genomes]
rs1959144	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs1959145	0.92[EUR][1000 genomes]
rs2092914	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2149839	0.91[EUR][1000 genomes]
rs2183277	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2184601	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2210805	0.86[EUR][1000 genomes]
rs2268956	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2268959	0.90[ASN][1000 genomes]
rs2300864	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2411354	0.84[AFR][1000 genomes]
rs2411356	0.90[ASN][1000 genomes]
rs2411815	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2411820	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2898814	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2898818	0.92[EUR][1000 genomes]
rs34640387	0.88[ASN][1000 genomes]
rs34772005	0.82[ASN][1000 genomes]
rs35949016	0.90[ASN][1000 genomes]
rs3825639	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902399	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4902404	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902408	0.84[AFR][1000 genomes]
rs4902413	0.83[AFR][1000 genomes]
rs61987993	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6573612	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6573614	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6573616	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6573617	0.87[EUR][1000 genomes]
rs6573618	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573619	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7140341	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7140695	0.92[EUR][1000 genomes]
rs7141536	0.92[EUR][1000 genomes]
rs7143318	0.90[EUR][1000 genomes]
rs7144345	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144415	0.85[EUR][1000 genomes]
rs7144971	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7145500	0.81[EUR][1000 genomes]
rs7145759	0.83[EUR][1000 genomes]
rs7146993	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7147002	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7147636	0.87[EUR][1000 genomes]
rs7150094	0.80[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7150648	0.87[EUR][1000 genomes]
rs7151561	0.84[EUR][1000 genomes]
rs7157109	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7158153	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72716407	0.90[ASN][1000 genomes]
rs72716408	0.90[ASN][1000 genomes]
rs72716418	0.83[ASN][1000 genomes]
rs72716420	0.90[ASN][1000 genomes]
rs72716421	0.90[ASN][1000 genomes]
rs8003464	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs8005243	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8007497	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8010726	0.90[EUR][1000 genomes]
rs8011224	0.88[EUR][1000 genomes]
rs8017880	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs8019762	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8022080	0.80[EUR][1000 genomes]
rs9323460	0.90[EUR][1000 genomes]
rs9323461	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66077600-66114400	Weak transcription	Ovary	ovary
2	chr14:66080800-66117600	Weak transcription	Left Ventricle	heart
3	chr14:66081400-66142200	Weak transcription	Thymus	Thymus
4	chr14:66081800-66112400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:66082200-66112600	Weak transcription	NHDF-Ad	bronchial
6	chr14:66082800-66117600	Weak transcription	Aorta	Aorta
7	chr14:66086400-66119600	Weak transcription	Pancreas	Pancrea
8	chr14:66090800-66145000	Weak transcription	Small Intestine	intestine
9	chr14:66092800-66141000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr14:66096000-66105400	Weak transcription	HUVEC	blood vessel
11	chr14:66098000-66116000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr14:66098000-66125000	Weak transcription	Brain Substantia Nigra	brain
13	chr14:66098200-66115200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:66098200-66118800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:66099000-66135200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:66099200-66115200	Weak transcription	Placenta	Placenta
17	chr14:66099200-66135800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr14:66099200-66144000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:66100600-66160000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:66102200-66104800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr14:66102200-66108200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:66102800-66105200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr14:66102800-66105200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr14:66103000-66105200	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr14:66103200-66105000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr14:66103200-66105400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr14:66103200-66112400	Weak transcription	Fetal Intestine Large	intestine
28	chr14:66103600-66105000	Genic enhancers	Dnd41	blood
29	chr14:66103800-66105200	Genic enhancers	Primary B cells from peripheral blood	blood
30	chr14:66103800-66105200	Enhancers	GM12878-XiMat	blood
31	chr14:66104000-66104800	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr14:66104000-66105200	Enhancers	Stomach Mucosa	stomach
33	chr14:66104400-66104800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr14:66104400-66104800	Enhancers	Sigmoid Colon	Sigmoid Colon
35	chr14:66104400-66105000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:66104400-66105000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:66104400-66105000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:66104400-66105000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr14:66104400-66105000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:66104400-66105000	Enhancers	Esophagus	oesophagus
41	chr14:66104400-66105000	Enhancers	Fetal Thymus	thymus
42	chr14:66104400-66105000	Enhancers	Gastric	stomach
43	chr14:66104400-66105000	Enhancers	HMEC	breast
44	chr14:66104400-66105000	Enhancers	NHEK	skin
45	chr14:66104400-66105200	Enhancers	Primary T cells fromperipheralblood	blood
46	chr14:66104400-66105200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr14:66104400-66105200	Enhancers	NH-A	brain
48	chr14:66104400-66105400	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr14:66104600-66104800	Enhancers	Rectal Mucosa Donor 29	rectum
50	chr14:66104600-66105000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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