Variant report

Variant	rs7147636
Chromosome Location	chr14:66011184-66011185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65996757..65998904-chr14:66010555..66012729,2	MCF-7	breast:

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10131715	0.82[AMR][1000 genomes]
rs10142283	0.81[CEU][hapmap];0.87[EUR][1000 genomes]
rs10143206	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs10144979	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs10145146	0.81[EUR][1000 genomes]
rs10148529	0.87[EUR][1000 genomes]
rs10150412	0.82[EUR][1000 genomes]
rs10152007	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs10873191	0.88[CEU][hapmap];0.86[EUR][1000 genomes]
rs1113962	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11158595	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs11158603	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs11158604	0.88[EUR][1000 genomes]
rs11158605	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11158607	0.93[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1121885	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs11844682	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs12433597	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12587057	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs1889731	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs1953415	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs1953418	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs1956010	0.89[CEU][hapmap];0.81[AMR][1000 genomes]
rs1958559	0.82[CEU][hapmap]
rs1958560	0.82[CEU][hapmap];0.95[ASN][1000 genomes]
rs1959144	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs1959145	0.86[EUR][1000 genomes]
rs1999725	0.81[CEU][hapmap]
rs2064695	0.81[CEU][hapmap]
rs2092914	0.92[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2149839	0.85[EUR][1000 genomes]
rs2183277	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2184601	0.81[CEU][hapmap]
rs2210805	0.84[CEU][hapmap]
rs2268955	0.82[CEU][hapmap]
rs2268956	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs2300864	0.83[EUR][1000 genomes]
rs2411815	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2411820	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs2898814	0.81[CEU][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2898818	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs3825639	0.88[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4902399	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs4902404	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs6573612	0.84[EUR][1000 genomes]
rs6573614	0.84[EUR][1000 genomes]
rs6573615	0.81[CEU][hapmap]
rs6573616	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs6573618	0.88[EUR][1000 genomes]
rs6573619	0.88[EUR][1000 genomes]
rs7140341	0.88[CEU][hapmap]
rs7140695	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs7141536	0.84[CEU][hapmap];0.86[EUR][1000 genomes]
rs7143318	0.83[EUR][1000 genomes]
rs7144345	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs7144971	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs7145500	0.84[CEU][hapmap]
rs7145759	0.81[CEU][hapmap]
rs7146993	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs7147002	0.85[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7147536	0.81[CEU][hapmap]
rs7150094	0.89[EUR][1000 genomes]
rs7150448	0.81[CEU][hapmap]
rs7150648	0.80[EUR][1000 genomes]
rs7151561	0.81[CEU][hapmap]
rs7157109	0.81[CEU][hapmap]
rs7158153	0.81[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8003464	0.82[EUR][1000 genomes]
rs8005243	0.88[EUR][1000 genomes]
rs8007497	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs8010726	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs8011224	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs8017880	0.89[EUR][1000 genomes]
rs8019762	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs9323460	0.85[EUR][1000 genomes]
rs9323461	0.85[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65985000-66025200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr14:65995200-66028000	Weak transcription	Dnd41	blood
3	chr14:65995400-66061000	Weak transcription	Gastric	stomach
4	chr14:66002400-66028000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:66003000-66028000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:66003400-66028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:66003800-66017800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr14:66003800-66041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:66004000-66018000	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:66005400-66028400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:66007600-66017600	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr14:66008600-66025800	Weak transcription	Primary T cells from cord blood	blood
13	chr14:66008600-66028000	Weak transcription	Primary B cells from cord blood	blood
14	chr14:66010800-66011600	Enhancers	Pancreatic Islets	Pancreatic Islet

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