Variant report

Variant	rs7151561
Chromosome Location	chr14:65890603-65890604
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10138671	0.89[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs10142283	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs10144979	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10148529	0.84[EUR][1000 genomes]
rs10150412	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10152007	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs10873190	0.82[EUR][1000 genomes]
rs10873191	0.84[EUR][1000 genomes]
rs1113962	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11158595	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11158603	0.96[CEU][hapmap]
rs11158604	0.85[EUR][1000 genomes]
rs11623662	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs11629437	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11844682	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12433597	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs12587057	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs12885842	0.96[CEU][hapmap];0.87[AMR][1000 genomes]
rs1889731	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1953415	0.96[CEU][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1953418	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1959144	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1959145	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1999725	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2064695	0.81[CEU][hapmap]
rs2092914	0.92[CEU][hapmap]
rs2149839	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2152374	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2183277	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs2184601	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2185454	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2210805	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2268956	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs2411356	0.85[CEU][hapmap]
rs2411815	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs2411820	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2411823	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2898814	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2898818	0.96[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2898820	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3825639	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4359350	0.92[ASN][1000 genomes]
rs4587890	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4899178	0.92[ASN][1000 genomes]
rs4902399	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4902404	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6573609	0.90[ASN][1000 genomes]
rs6573611	0.92[ASN][1000 genomes]
rs6573612	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6573614	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6573615	0.84[CEU][hapmap];0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs6573616	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs6573618	0.85[EUR][1000 genomes]
rs6573619	0.85[EUR][1000 genomes]
rs7140341	0.96[CEU][hapmap]
rs7140695	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7141536	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7142906	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7143318	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7144345	0.83[EUR][1000 genomes]
rs7144415	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7145500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7145759	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7146993	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7147002	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs7147536	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7147636	0.81[CEU][hapmap]
rs7150094	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7150448	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7150648	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7157109	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7158153	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7160780	0.84[CEU][hapmap]
rs8003464	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8005243	0.85[EUR][1000 genomes]
rs8007497	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs8010726	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8011224	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8012834	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8013442	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8017880	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8019762	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs8022053	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8022080	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9323460	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9323461	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs9972106	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3363921	chr14:65890588-65890927	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65880600-65899400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:65880600-65899400	Weak transcription	Small Intestine	intestine
3	chr14:65880800-65896800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:65880800-65898000	Weak transcription	Gastric	stomach
5	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:65881000-65899400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
8	chr14:65881800-65895000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:65881800-65901000	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:65881800-65902000	Weak transcription	Primary B cells from cord blood	blood
11	chr14:65881800-65902000	Weak transcription	Fetal Intestine Large	intestine
12	chr14:65882600-65900200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr14:65886200-65895600	Weak transcription	Primary T cells from cord blood	blood
14	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr14:65886800-65890800	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr14:65886800-65898000	Weak transcription	Dnd41	blood
17	chr14:65887000-65892600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr14:65887400-65898400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr14:65888200-65891400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:65888200-65892800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:65888200-65898800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr14:65888200-65898800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:65888400-65898800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr14:65888400-65905400	Weak transcription	Ovary	ovary
25	chr14:65888800-65892200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr14:65888800-65898800	Weak transcription	Primary B cells from peripheral blood	blood
27	chr14:65889000-65898800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr14:65889000-65901400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:65889200-65894000	Weak transcription	Brain Substantia Nigra	brain
30	chr14:65889200-65894400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr14:65889200-65894600	Weak transcription	Brain Angular Gyrus	brain
32	chr14:65889200-65898000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr14:65889200-65899400	Weak transcription	Colon Smooth Muscle	Colon
34	chr14:65889200-65899400	Weak transcription	NHDF-Ad	bronchial
35	chr14:65889400-65891200	Weak transcription	NH-A	brain
36	chr14:65889400-65891200	Weak transcription	Osteobl	bone
37	chr14:65889400-65892600	Weak transcription	K562	blood
38	chr14:65889400-65894600	Weak transcription	Brain Hippocampus Middle	brain
39	chr14:65889600-65891400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr14:65890400-65891000	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr14:65890600-65890800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr14:65890600-65891000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr14:65890600-65891000	Enhancers	Stomach Mucosa	stomach
44	chr14:65890600-65891200	Active TSS	Pancreatic Islets	Pancreatic Islet
45	chr14:65890600-65891600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr14:65890600-65891600	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr14:65890600-65891800	Enhancers	Primary T helper cells fromperipheralblood	blood

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