Variant report

Variant	rs1959145
Chromosome Location	chr14:65954740-65954741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr14:65954641-65954927	HEK293-T-REx	kidney:	n/a	n/a

Variant related genes	Relation type
FUT8	TF binding region

Extended variants
information (count: 98 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10138671	0.83[ASN][1000 genomes]
rs10142283	0.92[EUR][1000 genomes]
rs10143206	0.88[EUR][1000 genomes]
rs10144979	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10145146	0.85[EUR][1000 genomes]
rs10148529	0.92[EUR][1000 genomes]
rs10150412	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10152007	0.93[EUR][1000 genomes]
rs10873190	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10873191	0.91[EUR][1000 genomes]
rs1113962	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11158595	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11158603	0.85[EUR][1000 genomes]
rs11158604	0.93[EUR][1000 genomes]
rs11158605	0.84[EUR][1000 genomes]
rs11158607	0.83[EUR][1000 genomes]
rs1121885	0.86[EUR][1000 genomes]
rs11623662	0.95[ASN][1000 genomes]
rs11629437	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11844682	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12433597	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12587057	0.93[EUR][1000 genomes]
rs12885842	0.86[AMR][1000 genomes]
rs1889731	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1953415	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1953418	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1959144	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1999725	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2092914	0.85[EUR][1000 genomes]
rs2149839	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2152374	0.82[EUR][1000 genomes]
rs2183277	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2184601	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2185454	0.85[EUR][1000 genomes]
rs2210805	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2268956	0.92[EUR][1000 genomes]
rs2300864	0.88[EUR][1000 genomes]
rs2411815	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2411820	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2411823	0.86[ASN][1000 genomes]
rs2898814	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2898818	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2898820	0.87[EUR][1000 genomes]
rs3825639	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4359350	0.86[ASN][1000 genomes]
rs4587890	0.86[ASN][1000 genomes]
rs4899178	0.86[ASN][1000 genomes]
rs4902399	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4902404	0.94[EUR][1000 genomes]
rs61987993	0.83[EUR][1000 genomes]
rs6573609	0.84[ASN][1000 genomes]
rs6573611	0.86[ASN][1000 genomes]
rs6573612	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6573614	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6573615	0.89[ASN][1000 genomes]
rs6573616	0.93[EUR][1000 genomes]
rs6573617	0.87[EUR][1000 genomes]
rs6573618	0.93[EUR][1000 genomes]
rs6573619	0.92[EUR][1000 genomes]
rs7140341	0.84[EUR][1000 genomes]
rs7140695	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7141536	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7142906	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143318	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7144345	0.91[EUR][1000 genomes]
rs7144415	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7144971	0.88[EUR][1000 genomes]
rs7145500	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7145759	0.85[EUR][1000 genomes]
rs7146993	0.92[EUR][1000 genomes]
rs7147002	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7147536	0.88[ASN][1000 genomes]
rs7147636	0.86[EUR][1000 genomes]
rs7150094	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7150448	0.87[EUR][1000 genomes]
rs7150648	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7151561	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7157109	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7158153	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8003464	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8005243	0.92[EUR][1000 genomes]
rs8007497	0.96[EUR][1000 genomes]
rs8010726	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8011224	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8012834	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8013442	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8017880	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8019762	0.92[EUR][1000 genomes]
rs8022053	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8022080	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9323460	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9323461	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9972106	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65931400-65966200	Weak transcription	Aorta	Aorta
2	chr14:65936600-65957400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:65937400-65961600	Weak transcription	Fetal Intestine Large	intestine
4	chr14:65938400-65963400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr14:65939000-65969400	Weak transcription	Dnd41	blood
6	chr14:65940600-65959400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:65945200-65980000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr14:65945600-65959000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr14:65946400-65954800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr14:65949600-65954800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr14:65949600-65970200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr14:65950000-65954800	Weak transcription	Brain Germinal Matrix	brain
13	chr14:65950000-65955000	Weak transcription	Ovary	ovary
14	chr14:65950000-65955200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:65950000-65957200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr14:65950000-65965000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:65950000-65966000	Weak transcription	Psoas Muscle	Psoas
18	chr14:65950000-65969400	Weak transcription	NH-A	brain
19	chr14:65950000-65973400	Weak transcription	Gastric	stomach
20	chr14:65950200-65955000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:65951800-65955200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr14:65952200-65960000	Enhancers	Brain Substantia Nigra	brain
23	chr14:65952400-65955000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr14:65952600-65954800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr14:65952600-65956800	Weak transcription	Small Intestine	intestine
26	chr14:65952600-65963200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr14:65952800-65955000	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr14:65952800-65955000	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:65952800-65955000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr14:65952800-65955000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:65953200-65955000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr14:65953400-65954800	Weak transcription	Fetal Brain Male	brain
33	chr14:65953400-65955000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr14:65953400-65955600	Weak transcription	Fetal Brain Female	brain
35	chr14:65953400-65956800	Weak transcription	Brain Angular Gyrus	brain
36	chr14:65953600-65959800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr14:65953800-65954800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:65953800-65955000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr14:65953800-65970600	Weak transcription	Stomach Mucosa	stomach
40	chr14:65954000-65955400	Weak transcription	Brain Hippocampus Middle	brain
41	chr14:65954400-65955600	Enhancers	GM12878-XiMat	blood
42	chr14:65954400-65956600	Enhancers	Primary T cells from cord blood	blood
43	chr14:65954600-65954800	Enhancers	Left Ventricle	heart
44	chr14:65954600-65955600	Enhancers	Primary B cells from peripheral blood	blood
45	chr14:65954600-65955600	Enhancers	Brain Anterior Caudate	brain

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