Variant report

Variant	rs8022080
Chromosome Location	chr14:65999088-65999089
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10138671	0.82[ASN][1000 genomes]
rs10142283	0.80[EUR][1000 genomes]
rs10144979	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10145146	0.88[EUR][1000 genomes]
rs10148529	0.80[EUR][1000 genomes]
rs10150412	0.86[AMR][1000 genomes]
rs10152007	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10873190	0.84[AMR][1000 genomes]
rs1113962	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11158595	0.85[AFR][1000 genomes]
rs11158598	0.88[EUR][1000 genomes]
rs11158603	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11158604	0.81[EUR][1000 genomes]
rs11623662	0.96[ASN][1000 genomes]
rs11844682	0.87[AMR][1000 genomes]
rs12433597	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12587057	0.81[EUR][1000 genomes]
rs12885842	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1889731	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1953415	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1953418	0.87[AMR][1000 genomes]
rs1956010	0.80[EUR][1000 genomes]
rs1959144	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1959145	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1999725	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2149839	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2183277	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2185454	0.82[AFR][1000 genomes]
rs2268956	0.81[EUR][1000 genomes]
rs2411815	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2411820	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2411823	0.85[ASN][1000 genomes]
rs2898814	0.87[AMR][1000 genomes]
rs2898818	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3825639	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4359350	0.85[ASN][1000 genomes]
rs4587890	0.85[ASN][1000 genomes]
rs4899178	0.85[ASN][1000 genomes]
rs4902399	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4902404	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61987993	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6573609	0.83[ASN][1000 genomes]
rs6573611	0.85[ASN][1000 genomes]
rs6573612	0.87[AMR][1000 genomes]
rs6573614	0.91[AMR][1000 genomes]
rs6573615	0.88[ASN][1000 genomes]
rs6573616	0.82[EUR][1000 genomes]
rs6573617	0.82[EUR][1000 genomes]
rs6573618	0.81[EUR][1000 genomes]
rs6573619	0.81[EUR][1000 genomes]
rs7140341	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7140695	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7141536	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7142906	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7143318	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs7144415	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7145500	0.87[ASN][1000 genomes]
rs7146993	0.80[EUR][1000 genomes]
rs7147002	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7147536	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7150094	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7150448	0.82[AFR][1000 genomes]
rs7151561	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7158153	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8003464	0.80[AMR][1000 genomes]
rs8005243	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8007497	0.84[EUR][1000 genomes]
rs8010726	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs8011224	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8012834	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8013442	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs8017880	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8019762	0.80[EUR][1000 genomes]
rs8022053	0.86[ASN][1000 genomes]
rs9323460	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9323461	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9972106	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65984800-66003000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:65985000-66025200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:65995200-66028000	Weak transcription	Dnd41	blood
4	chr14:65995400-66004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:65995400-66004600	Weak transcription	Pancreas	Pancrea
6	chr14:65995400-66004600	Weak transcription	Thymus	Thymus
7	chr14:65995400-66006600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:65995400-66061000	Weak transcription	Gastric	stomach
9	chr14:65996400-66004200	Weak transcription	Fetal Stomach	stomach
10	chr14:65998200-65999400	ZNF genes & repeats	GM12878-XiMat	blood
11	chr14:65998400-66002800	Weak transcription	Primary B cells from cord blood	blood
12	chr14:65998800-66001000	ZNF genes & repeats	Primary T cells from cord blood	blood

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