Variant report

Variant	rs10873190
Chromosome Location	chr14:65981439-65981440
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10142283	0.89[EUR][1000 genomes]
rs10143206	0.81[EUR][1000 genomes]
rs10144979	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10148529	0.85[EUR][1000 genomes]
rs10150412	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10152007	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10873191	0.83[EUR][1000 genomes]
rs1113962	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11158595	0.84[EUR][1000 genomes]
rs11158604	0.86[EUR][1000 genomes]
rs11629437	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11844682	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12433597	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12587057	0.86[EUR][1000 genomes]
rs12885842	0.81[AMR][1000 genomes]
rs1889731	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1953415	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1953418	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1959144	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1959145	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2149839	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2152374	0.81[EUR][1000 genomes]
rs2183277	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2184601	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2185454	0.85[EUR][1000 genomes]
rs2210805	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2268956	0.85[EUR][1000 genomes]
rs2300864	0.81[EUR][1000 genomes]
rs2411815	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2411820	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2898814	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2898818	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2898820	0.83[EUR][1000 genomes]
rs3825639	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4902399	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4902404	0.86[EUR][1000 genomes]
rs6573612	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6573614	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6573616	0.87[EUR][1000 genomes]
rs6573618	0.86[EUR][1000 genomes]
rs6573619	0.85[EUR][1000 genomes]
rs7140695	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7141536	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7142906	0.85[AMR][1000 genomes]
rs7143318	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7144345	0.84[EUR][1000 genomes]
rs7144415	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7144971	0.81[EUR][1000 genomes]
rs7145500	0.83[EUR][1000 genomes]
rs7145759	0.85[EUR][1000 genomes]
rs7146993	0.85[EUR][1000 genomes]
rs7147002	0.87[EUR][1000 genomes]
rs7150094	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7150448	0.83[EUR][1000 genomes]
rs7150648	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7151561	0.82[EUR][1000 genomes]
rs7157109	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7158153	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8003464	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8005243	0.85[EUR][1000 genomes]
rs8007497	0.85[EUR][1000 genomes]
rs8010726	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8011224	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8012834	0.83[AMR][1000 genomes]
rs8017880	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8019762	0.85[EUR][1000 genomes]
rs8022053	0.81[EUR][1000 genomes]
rs8022080	0.84[AMR][1000 genomes]
rs9323460	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9323461	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65963600-65994400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65969800-65994600	Weak transcription	Left Ventricle	heart
3	chr14:65970200-65985400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr14:65970200-65985400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:65970400-65981600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:65971400-65984200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:65976400-65988200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:65977600-65983600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr14:65977600-65983600	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:65977800-65983600	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr14:65979400-65983000	Weak transcription	Primary T cells from cord blood	blood
12	chr14:65979400-65984200	Weak transcription	GM12878-XiMat	blood
13	chr14:65979400-65988800	Weak transcription	Primary B cells from cord blood	blood
14	chr14:65980200-65984200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr14:65980400-65982800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:65980800-65983000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr14:65981000-65988400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr14:65981200-65984400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr14:65981200-65994600	Weak transcription	Gastric	stomach
20	chr14:65981400-65984400	Weak transcription	Brain Substantia Nigra	brain
21	chr14:65981400-65996800	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links