Variant report

Variant	rs7157109
Chromosome Location	chr14:65900433-65900434
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65879008..65881327-chr14:65899044..65901379,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 119 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1009465	0.85[AFR][1000 genomes]
rs10138671	0.89[CEU][hapmap]
rs10142283	1.00[CEU][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10143206	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10144979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10145146	0.89[AFR][1000 genomes]
rs10148529	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10150412	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152007	0.96[CEU][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs10467734	0.86[AFR][1000 genomes]
rs10483776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10873190	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10873191	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1113962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11158595	0.96[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11158597	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs11158603	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs11158604	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11623662	0.85[CEU][hapmap]
rs11629437	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11844682	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848209	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12433597	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12587057	0.96[CEU][hapmap];0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12885842	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17246091	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs17753508	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1889731	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953415	0.96[CEU][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1953418	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959144	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959145	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1999725	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2064695	0.81[CEU][hapmap]
rs2092914	0.92[CEU][hapmap]
rs2149839	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2152374	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2183277	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2184601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185454	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2210805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268956	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2300864	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2411354	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs2411356	0.85[CEU][hapmap];0.85[CHB][hapmap];0.83[YRI][hapmap]
rs2411815	0.96[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs2411820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2411823	0.89[CEU][hapmap]
rs2898814	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2898816	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2898818	0.96[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2898820	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3759680	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3825639	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4587890	0.89[CEU][hapmap]
rs4902399	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902404	0.96[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs61987993	0.89[AFR][1000 genomes]
rs6573612	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573614	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573615	0.84[CEU][hapmap]
rs6573616	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6573618	0.87[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6573619	0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7140341	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs7140695	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7141367	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7141536	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7142906	0.80[AMR][1000 genomes]
rs7143318	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7144345	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7144415	0.86[EUR][1000 genomes]
rs7144971	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7145500	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7145759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7146993	0.96[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7147002	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7147536	0.96[CEU][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7147636	0.81[CEU][hapmap]
rs7150094	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150448	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7150648	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151561	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7153497	0.82[AFR][1000 genomes]
rs7158153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7160390	0.95[YRI][hapmap]
rs7160780	0.84[CEU][hapmap];0.81[YRI][hapmap]
rs72714423	0.93[ASN][1000 genomes]
rs72714428	0.96[ASN][1000 genomes]
rs72714433	0.96[ASN][1000 genomes]
rs72714436	0.96[ASN][1000 genomes]
rs72714439	0.96[ASN][1000 genomes]
rs72714440	0.96[ASN][1000 genomes]
rs72714442	0.96[ASN][1000 genomes]
rs72714447	0.96[ASN][1000 genomes]
rs72714460	0.89[ASN][1000 genomes]
rs72714461	0.89[ASN][1000 genomes]
rs72714468	0.89[ASN][1000 genomes]
rs72714478	0.89[ASN][1000 genomes]
rs72714482	0.86[ASN][1000 genomes]
rs72714483	0.82[ASN][1000 genomes]
rs72714484	0.81[ASN][1000 genomes]
rs8003464	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005243	0.86[EUR][1000 genomes]
rs8007497	0.96[CEU][hapmap];0.82[YRI][hapmap];0.85[EUR][1000 genomes]
rs8010726	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8011224	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8012834	0.81[AMR][1000 genomes]
rs8013442	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8017880	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019762	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs8022053	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9323460	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323461	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.86[AFR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9972106	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65880800-65904800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr14:65881000-65902600	Weak transcription	Fetal Intestine Small	intestine
3	chr14:65881800-65901000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:65881800-65902000	Weak transcription	Primary B cells from cord blood	blood
5	chr14:65881800-65902000	Weak transcription	Fetal Intestine Large	intestine
6	chr14:65886600-65905600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:65888400-65905400	Weak transcription	Ovary	ovary
8	chr14:65889000-65901400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:65891600-65904000	Weak transcription	Lung	lung
10	chr14:65891800-65904400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr14:65893000-65917600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:65893600-65902200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
15	chr14:65898000-65901200	Enhancers	Dnd41	blood
16	chr14:65898400-65900800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr14:65898400-65901400	Enhancers	Osteobl	bone
18	chr14:65898400-65901600	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr14:65898400-65935600	Weak transcription	Gastric	stomach
20	chr14:65898600-65900800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:65898800-65901200	Enhancers	Primary B cells from peripheral blood	blood
22	chr14:65898800-65901200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr14:65899000-65901000	Enhancers	Brain Cingulate Gyrus	brain
24	chr14:65899000-65902200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr14:65899000-65903600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr14:65899200-65900600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
27	chr14:65899200-65900600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr14:65899200-65901200	Enhancers	Brain Inferior Temporal Lobe	brain
29	chr14:65899200-65901600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:65899200-65913000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr14:65899400-65901000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr14:65899400-65901200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:65899400-65901400	Enhancers	iPS-20b Cell Line	embryonic stem cell
34	chr14:65899400-65901800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
35	chr14:65899600-65900800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr14:65899600-65900800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr14:65899600-65900800	Weak transcription	Right Atrium	heart
38	chr14:65899600-65901000	Flanking Active TSS	GM12878-XiMat	blood
39	chr14:65899600-65901400	Enhancers	Brain Angular Gyrus	brain
40	chr14:65899600-65901600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:65899600-65901800	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr14:65899600-65905200	Weak transcription	Psoas Muscle	Psoas
43	chr14:65899600-65909600	Weak transcription	Left Ventricle	heart
44	chr14:65899600-65929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:65899800-65900600	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:65899800-65900800	Enhancers	Primary T cells from cord blood	blood
47	chr14:65899800-65900800	Weak transcription	NH-A	brain
48	chr14:65899800-65901400	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr14:65899800-65901800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr14:65899800-65901800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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