Variant report

Variant	rs2898816
Chromosome Location	chr14:66008160-66008161
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66004895..66006521-chr14:66007224..66009020,2	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10083363	1.00[CEU][hapmap];0.94[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1009465	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135969	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136752	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10142283	0.80[YRI][hapmap]
rs10143206	1.00[YRI][hapmap]
rs10144979	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10145146	0.80[AFR][1000 genomes]
rs10148699	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150412	0.81[AFR][1000 genomes]
rs10152007	0.82[YRI][hapmap];0.85[AFR][1000 genomes]
rs10467734	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873191	1.00[YRI][hapmap]
rs10873192	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1113962	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11158595	1.00[YRI][hapmap]
rs11158597	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11158603	1.00[YRI][hapmap]
rs1121885	1.00[YRI][hapmap]
rs11622767	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11844682	0.81[AFR][1000 genomes]
rs11848209	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433597	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1889731	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs1953415	0.89[AFR][1000 genomes]
rs1953418	1.00[YRI][hapmap]
rs1956008	1.00[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956009	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs1959144	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2149839	0.80[AFR][1000 genomes]
rs2180299	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183277	0.85[AFR][1000 genomes]
rs2184601	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs2210805	0.82[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2268956	1.00[YRI][hapmap]
rs2411349	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2411354	1.00[CEU][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2411356	0.85[YRI][hapmap]
rs2411813	0.84[MEX][hapmap];1.00[ASN][1000 genomes]
rs2411815	1.00[YRI][hapmap]
rs2411820	0.85[AFR][1000 genomes]
rs2898814	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2898818	1.00[YRI][hapmap]
rs3825639	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4902399	0.82[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4902404	1.00[YRI][hapmap]
rs4902408	1.00[CEU][hapmap];0.87[GIH][hapmap];0.81[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902413	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987993	0.80[AFR][1000 genomes]
rs6573612	0.85[AFR][1000 genomes]
rs6573616	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6573619	0.84[YRI][hapmap]
rs7140341	0.94[YRI][hapmap];0.80[AFR][1000 genomes]
rs7140695	1.00[YRI][hapmap]
rs7141367	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141536	1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs7144345	1.00[YRI][hapmap]
rs7144971	1.00[YRI][hapmap]
rs7145759	0.94[YRI][hapmap]
rs7146993	0.84[ASW][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7147002	0.89[YRI][hapmap];0.83[AFR][1000 genomes]
rs7147231	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7147624	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150094	0.85[AFR][1000 genomes]
rs7150233	1.00[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150448	1.00[YRI][hapmap]
rs7150648	0.80[AFR][1000 genomes]
rs7151148	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7153497	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157109	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7158153	0.86[YRI][hapmap];0.85[AFR][1000 genomes]
rs7160390	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160780	0.84[YRI][hapmap]
rs72714420	1.00[ASN][1000 genomes]
rs72714491	1.00[ASN][1000 genomes]
rs72714498	1.00[ASN][1000 genomes]
rs8003464	0.81[AFR][1000 genomes]
rs8010558	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8010726	1.00[YRI][hapmap]
rs8017880	0.81[AFR][1000 genomes]
rs8019762	1.00[YRI][hapmap]
rs8021889	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323461	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs9671406	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65985000-66025200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr14:65995200-66028000	Weak transcription	Dnd41	blood
3	chr14:65995400-66061000	Weak transcription	Gastric	stomach
4	chr14:66002400-66028000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:66003000-66028000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:66003400-66028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:66003800-66017800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr14:66003800-66041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:66004000-66018000	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:66004800-66008800	Weak transcription	Spleen	Spleen
11	chr14:66004800-66010400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:66005400-66008400	Weak transcription	Thymus	Thymus
13	chr14:66005400-66008600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:66005400-66028400	Weak transcription	Primary hematopoietic stem cells	blood
15	chr14:66006200-66008600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr14:66007200-66008600	Strong transcription	Primary B cells from cord blood	blood
17	chr14:66007200-66008600	ZNF genes & repeats	Primary T cells from cord blood	blood
18	chr14:66007600-66017600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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