Variant report

Variant	rs10148699
Chromosome Location	chr14:66199662-66199663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66198099..66200739-chr14:66200960..66203371,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10083363	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135969	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142283	0.83[YRI][hapmap]
rs10143206	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs10152007	0.84[YRI][hapmap]
rs10873191	0.95[YRI][hapmap]
rs10873192	1.00[CEU][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1113962	0.91[YRI][hapmap]
rs11158603	0.95[YRI][hapmap]
rs1121885	0.91[YRI][hapmap]
rs11622767	0.83[EUR][1000 genomes]
rs11848209	1.00[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433597	0.91[YRI][hapmap]
rs1956008	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956009	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2180299	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268956	0.95[YRI][hapmap]
rs2300864	0.80[AFR][1000 genomes]
rs2411349	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2411354	1.00[CEU][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2411813	1.00[ASN][1000 genomes]
rs2411815	0.95[YRI][hapmap]
rs2898814	0.91[YRI][hapmap]
rs2898816	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3825639	0.95[YRI][hapmap]
rs4902404	0.95[YRI][hapmap]
rs4902408	1.00[CEU][hapmap];0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902413	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573616	0.94[YRI][hapmap]
rs7140341	0.84[YRI][hapmap]
rs7144345	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs7144971	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs7146993	0.95[YRI][hapmap]
rs7147002	0.90[YRI][hapmap]
rs7147231	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150233	1.00[CEU][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153497	1.00[ASN][1000 genomes]
rs7158153	0.87[YRI][hapmap]
rs7160390	1.00[CEU][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72714491	1.00[ASN][1000 genomes]
rs72714498	1.00[ASN][1000 genomes]
rs8007497	0.81[YRI][hapmap]
rs8010558	0.82[EUR][1000 genomes]
rs8017258	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs8019762	0.90[YRI][hapmap];0.80[AFR][1000 genomes]
rs8021889	1.00[CEU][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323461	0.90[YRI][hapmap]
rs9671406	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66179000-66206200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:66185400-66209000	Weak transcription	Brain Angular Gyrus	brain
3	chr14:66186400-66208800	Weak transcription	Fetal Brain Female	brain
4	chr14:66187000-66209000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:66187400-66208600	Weak transcription	Placenta	Placenta
6	chr14:66187600-66200000	Weak transcription	Brain Substantia Nigra	brain
7	chr14:66188000-66210800	Weak transcription	Fetal Lung	lung
8	chr14:66188200-66201400	Weak transcription	Psoas Muscle	Psoas
9	chr14:66188400-66210600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr14:66188800-66208800	Weak transcription	Liver	Liver
11	chr14:66189000-66209000	Weak transcription	NHDF-Ad	bronchial
12	chr14:66189600-66210800	Weak transcription	NHLF	lung
13	chr14:66189800-66209000	Weak transcription	HSMMtube	muscle
14	chr14:66190000-66208800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr14:66190000-66210800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr14:66190200-66210800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr14:66190400-66217000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr14:66191600-66212000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:66191800-66199800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:66191800-66200000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr14:66191800-66200800	Weak transcription	Brain Anterior Caudate	brain
22	chr14:66191800-66204400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr14:66191800-66208600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr14:66191800-66208800	Weak transcription	Gastric	stomach
25	chr14:66191800-66208800	Weak transcription	Pancreas	Pancrea
26	chr14:66191800-66210800	Weak transcription	HSMM	muscle
27	chr14:66191800-66217800	Weak transcription	Small Intestine	intestine
28	chr14:66192000-66206800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr14:66192200-66200000	Weak transcription	NH-A	brain
30	chr14:66192200-66208800	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr14:66192400-66210200	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr14:66192600-66210400	Weak transcription	Right Ventricle	heart
33	chr14:66192800-66210600	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr14:66192800-66211800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr14:66192800-66212200	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr14:66193000-66218800	Weak transcription	Colonic Mucosa	Colon
37	chr14:66193200-66206600	Strong transcription	Dnd41	blood
38	chr14:66193200-66208800	Weak transcription	Adipose Nuclei	Adipose
39	chr14:66193800-66208800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:66193800-66208800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr14:66194200-66207400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr14:66194200-66208800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr14:66194200-66210600	Weak transcription	Spleen	Spleen
44	chr14:66194400-66200000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr14:66194400-66200200	Weak transcription	Fetal Intestine Small	intestine
46	chr14:66194400-66201000	Weak transcription	Brain Germinal Matrix	brain
47	chr14:66194400-66201400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr14:66194400-66201400	Weak transcription	Left Ventricle	heart
49	chr14:66194400-66204400	Weak transcription	Fetal Intestine Large	intestine
50	chr14:66194400-66205400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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