Variant report

Variant	rs7153497
Chromosome Location	chr14:65998415-65998416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65996757..65998904-chr14:66010555..66012729,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10083363	1.00[ASN][1000 genomes]
rs1009465	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135969	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136752	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10144979	0.82[AFR][1000 genomes]
rs10145146	0.81[AFR][1000 genomes]
rs10148699	1.00[ASN][1000 genomes]
rs10150412	0.82[AFR][1000 genomes]
rs10152007	0.86[AFR][1000 genomes]
rs10467734	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873192	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1113962	0.85[AFR][1000 genomes]
rs11158597	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11622767	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11844682	0.82[AFR][1000 genomes]
rs11848209	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433597	0.86[AFR][1000 genomes]
rs1889731	0.82[AFR][1000 genomes]
rs1953415	0.90[AFR][1000 genomes]
rs1953418	0.80[AFR][1000 genomes]
rs1956008	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956009	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1959144	0.82[AFR][1000 genomes]
rs2149839	0.81[AFR][1000 genomes]
rs2180299	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183277	0.86[AFR][1000 genomes]
rs2184601	0.82[AFR][1000 genomes]
rs2210805	0.85[AFR][1000 genomes]
rs2411349	1.00[ASN][1000 genomes]
rs2411354	0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2411813	1.00[ASN][1000 genomes]
rs2411820	0.86[AFR][1000 genomes]
rs2898814	0.83[AFR][1000 genomes]
rs2898816	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898820	0.80[AFR][1000 genomes]
rs3825639	0.86[AFR][1000 genomes]
rs4902399	0.86[AFR][1000 genomes]
rs4902408	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902413	1.00[ASN][1000 genomes]
rs61987993	0.81[AFR][1000 genomes]
rs6573612	0.86[AFR][1000 genomes]
rs6573616	0.83[AFR][1000 genomes]
rs7140341	0.81[AFR][1000 genomes]
rs7141367	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141536	0.81[AFR][1000 genomes]
rs7146993	0.83[AFR][1000 genomes]
rs7147002	0.84[AFR][1000 genomes]
rs7147231	1.00[ASN][1000 genomes]
rs7147624	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150094	0.86[AFR][1000 genomes]
rs7150233	1.00[ASN][1000 genomes]
rs7150648	0.81[AFR][1000 genomes]
rs7151148	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7157109	0.82[AFR][1000 genomes]
rs7158153	0.86[AFR][1000 genomes]
rs7160390	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72714420	1.00[ASN][1000 genomes]
rs72714491	1.00[ASN][1000 genomes]
rs72714498	1.00[ASN][1000 genomes]
rs8003464	0.82[AFR][1000 genomes]
rs8010558	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8017880	0.82[AFR][1000 genomes]
rs8021889	1.00[ASN][1000 genomes]
rs9323461	0.86[AFR][1000 genomes]
rs9671406	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65984800-66003000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr14:65985000-66025200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:65995200-66028000	Weak transcription	Dnd41	blood
4	chr14:65995400-65998800	Weak transcription	Ovary	ovary
5	chr14:65995400-66004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:65995400-66004600	Weak transcription	Pancreas	Pancrea
7	chr14:65995400-66004600	Weak transcription	Thymus	Thymus
8	chr14:65995400-66006600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:65995400-66061000	Weak transcription	Gastric	stomach
10	chr14:65996000-65999000	Enhancers	Primary B cells from peripheral blood	blood
11	chr14:65996400-66004200	Weak transcription	Fetal Stomach	stomach
12	chr14:65998200-65999400	ZNF genes & repeats	GM12878-XiMat	blood
13	chr14:65998400-65998800	Enhancers	Brain Hippocampus Middle	brain
14	chr14:65998400-65999000	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr14:65998400-66002800	Weak transcription	Primary B cells from cord blood	blood

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