Variant report

Variant	rs11622767
Chromosome Location	chr14:66024153-66024154
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66020277..66021956-chr14:66022391..66024795,2	MCF-7	breast:
2	chr14:66021842..66025531-chr14:66028043..66031703,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10083363	0.83[EUR][1000 genomes]
rs1009465	0.89[EUR][1000 genomes]
rs10135969	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10136752	0.93[EUR][1000 genomes]
rs10145146	0.81[AFR][1000 genomes]
rs10148699	0.83[EUR][1000 genomes]
rs10467734	0.87[EUR][1000 genomes]
rs10873192	0.91[EUR][1000 genomes]
rs11158597	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11848209	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1956008	0.96[EUR][1000 genomes]
rs1956009	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2180299	0.91[EUR][1000 genomes]
rs2411349	0.83[EUR][1000 genomes]
rs2411354	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2898816	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4902408	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4902413	0.83[EUR][1000 genomes]
rs61987993	0.81[AFR][1000 genomes]
rs7140341	0.81[AFR][1000 genomes]
rs7141367	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs7147231	0.83[EUR][1000 genomes]
rs7150233	0.83[EUR][1000 genomes]
rs7151148	0.82[EUR][1000 genomes]
rs7153497	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7160390	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs8010558	0.91[EUR][1000 genomes]
rs8021889	0.83[EUR][1000 genomes]
rs9671406	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65985000-66025200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr14:65995200-66028000	Weak transcription	Dnd41	blood
3	chr14:65995400-66061000	Weak transcription	Gastric	stomach
4	chr14:66002400-66028000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:66003000-66028000	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr14:66003400-66028200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr14:66003800-66041200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:66005400-66028400	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:66008600-66025800	Weak transcription	Primary T cells from cord blood	blood
10	chr14:66008600-66028000	Weak transcription	Primary B cells from cord blood	blood
11	chr14:66013200-66028200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:66015200-66033600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr14:66016000-66032800	Weak transcription	Small Intestine	intestine
14	chr14:66016000-66041400	Weak transcription	Ovary	ovary
15	chr14:66016600-66028000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:66016600-66033800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr14:66018200-66031600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr14:66018600-66027800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:66019400-66028200	Weak transcription	GM12878-XiMat	blood
20	chr14:66021400-66046400	Weak transcription	Thymus	Thymus
21	chr14:66021800-66043000	Weak transcription	Fetal Intestine Small	intestine
22	chr14:66022200-66025600	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr14:66022400-66026000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr14:66022400-66026000	Weak transcription	Brain Angular Gyrus	brain
25	chr14:66022400-66028000	Weak transcription	Primary B cells from peripheral blood	blood
26	chr14:66022400-66028000	Weak transcription	Fetal Intestine Large	intestine
27	chr14:66022400-66033400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr14:66022400-66042200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr14:66022400-66047800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr14:66022400-66052400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr14:66022600-66025200	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:66022600-66026600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr14:66022800-66032800	Weak transcription	Adipose Nuclei	Adipose
34	chr14:66022800-66037000	Weak transcription	Stomach Mucosa	stomach
35	chr14:66023000-66025200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr14:66023200-66024800	Weak transcription	Brain Anterior Caudate	brain
37	chr14:66023200-66025200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr14:66023200-66025800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr14:66023200-66028200	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr14:66023200-66029400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr14:66023200-66033000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:66023200-66037400	Weak transcription	Brain Hippocampus Middle	brain
43	chr14:66023200-66040200	Weak transcription	Lung	lung
44	chr14:66023200-66052000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr14:66023200-66054400	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr14:66023400-66025800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr14:66023400-66028200	Weak transcription	Left Ventricle	heart
48	chr14:66023400-66032800	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr14:66023600-66031200	Weak transcription	Brain Cingulate Gyrus	brain
50	chr14:66023600-66038200	Weak transcription	Brain Substantia Nigra	brain

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