Variant report

Variant	rs7141367
Chromosome Location	chr14:65938641-65938642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1009465	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135969	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136752	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10142283	0.80[YRI][hapmap]
rs10143206	0.80[ASW][hapmap];1.00[YRI][hapmap]
rs10144979	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10145146	0.81[AFR][1000 genomes]
rs10150412	0.88[AFR][1000 genomes]
rs10152007	0.82[YRI][hapmap]
rs10467734	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873191	0.80[ASW][hapmap];1.00[YRI][hapmap]
rs10873192	1.00[CEU][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1113962	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11158595	1.00[YRI][hapmap]
rs11158597	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11158603	1.00[YRI][hapmap]
rs11622767	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11844682	0.80[AFR][1000 genomes]
rs11848209	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433597	1.00[YRI][hapmap]
rs1889731	0.80[ASW][hapmap];0.86[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs1953415	0.82[AFR][1000 genomes]
rs1953418	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1956008	1.00[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956009	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1959144	0.80[ASW][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2180299	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2184601	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs2210805	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2268956	0.80[ASW][hapmap];1.00[YRI][hapmap]
rs2411354	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2411356	0.85[YRI][hapmap]
rs2411813	1.00[ASN][1000 genomes]
rs2411815	1.00[YRI][hapmap]
rs2411820	0.84[AFR][1000 genomes]
rs2898814	1.00[YRI][hapmap]
rs2898816	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898818	1.00[YRI][hapmap]
rs3825639	1.00[YRI][hapmap]
rs4902399	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs4902404	1.00[YRI][hapmap]
rs4902408	1.00[CEU][hapmap];0.87[GIH][hapmap];0.94[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987993	0.81[AFR][1000 genomes]
rs6573612	0.84[AFR][1000 genomes]
rs6573616	1.00[YRI][hapmap]
rs6573619	0.84[YRI][hapmap]
rs7140341	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs7140695	1.00[YRI][hapmap]
rs7141536	1.00[YRI][hapmap]
rs7144345	1.00[YRI][hapmap]
rs7144971	0.80[ASW][hapmap];1.00[YRI][hapmap]
rs7145759	0.94[YRI][hapmap]
rs7146993	1.00[YRI][hapmap]
rs7147002	0.89[YRI][hapmap]
rs7147624	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150094	0.84[AFR][1000 genomes]
rs7150448	1.00[YRI][hapmap]
rs7151148	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7153497	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157109	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs7158153	0.86[YRI][hapmap]
rs7160390	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160780	0.84[YRI][hapmap]
rs72714420	1.00[ASN][1000 genomes]
rs72714491	1.00[ASN][1000 genomes]
rs72714498	1.00[ASN][1000 genomes]
rs8003464	0.88[AFR][1000 genomes]
rs8010558	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8010726	1.00[YRI][hapmap]
rs8017880	0.88[AFR][1000 genomes]
rs8019762	1.00[YRI][hapmap]
rs9323460	0.84[AFR][1000 genomes]
rs9323461	0.89[YRI][hapmap]
rs9671406	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv976347	chr14:65929311-65939441	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65911200-65942400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:65913800-65942400	Weak transcription	Left Ventricle	heart
3	chr14:65920800-65942400	Weak transcription	Stomach Mucosa	stomach
4	chr14:65923400-65945000	Weak transcription	NHDF-Ad	bronchial
5	chr14:65925800-65943200	Weak transcription	Thymus	Thymus
6	chr14:65928600-65949400	Weak transcription	Psoas Muscle	Psoas
7	chr14:65928800-65938800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:65929200-65939800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr14:65929800-65939200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:65929800-65943600	Weak transcription	HSMMtube	muscle
11	chr14:65929800-65944800	Weak transcription	NH-A	brain
12	chr14:65929800-65945400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr14:65930600-65940200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:65930600-65942800	Weak transcription	Primary T cells from cord blood	blood
15	chr14:65931400-65966200	Weak transcription	Aorta	Aorta
16	chr14:65934000-65944400	Weak transcription	HMEC	breast
17	chr14:65934800-65939200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr14:65934800-65939400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr14:65935200-65939200	Enhancers	Brain Substantia Nigra	brain
20	chr14:65935400-65939000	Strong transcription	Dnd41	blood
21	chr14:65935800-65939400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr14:65935800-65941000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr14:65935800-65942600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr14:65936000-65939000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr14:65936000-65939600	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr14:65936200-65938800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr14:65936200-65939200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr14:65936200-65939200	Enhancers	Brain Hippocampus Middle	brain
29	chr14:65936400-65939000	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr14:65936600-65938800	Enhancers	Adipose Nuclei	Adipose
31	chr14:65936600-65939000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:65936600-65957400	Weak transcription	Primary B cells from cord blood	blood
33	chr14:65936800-65939000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr14:65937200-65938800	Weak transcription	Pancreas	Pancrea
35	chr14:65937200-65939000	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr14:65937200-65939200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr14:65937200-65949600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr14:65937400-65938800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr14:65937400-65938800	Weak transcription	Brain Germinal Matrix	brain
40	chr14:65937400-65939000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr14:65937400-65939000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr14:65937400-65939200	Enhancers	Small Intestine	intestine
43	chr14:65937400-65939400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:65937400-65942200	Weak transcription	Fetal Intestine Small	intestine
45	chr14:65937400-65944800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr14:65937400-65961600	Weak transcription	Fetal Intestine Large	intestine
47	chr14:65937600-65938800	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr14:65937600-65938800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:65937600-65938800	Weak transcription	Brain Anterior Caudate	brain
50	chr14:65937600-65938800	Weak transcription	Brain Cingulate Gyrus	brain

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