Variant report

Variant	rs1956009
Chromosome Location	chr14:66102839-66102840
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10083363	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1009465	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10135969	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10136752	0.87[EUR][1000 genomes]
rs10142283	0.81[AFR][1000 genomes]
rs10143206	0.86[AFR][1000 genomes]
rs10144979	0.80[AFR][1000 genomes]
rs10145146	0.85[AFR][1000 genomes]
rs10148529	0.90[AFR][1000 genomes]
rs10148699	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10467734	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10873191	0.84[AFR][1000 genomes]
rs10873192	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11158597	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11158603	0.81[AFR][1000 genomes]
rs11158604	0.90[AFR][1000 genomes]
rs11622767	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11848209	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12587057	0.81[AFR][1000 genomes]
rs1956008	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2180299	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2268956	0.88[AFR][1000 genomes]
rs2300864	0.84[AFR][1000 genomes]
rs2411349	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2411354	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2898816	0.84[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs4902408	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4902413	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61987993	0.85[AFR][1000 genomes]
rs6573618	0.81[AFR][1000 genomes]
rs6573619	0.81[AFR][1000 genomes]
rs7140341	0.85[AFR][1000 genomes]
rs7141367	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7144345	0.86[AFR][1000 genomes]
rs7144971	0.86[AFR][1000 genomes]
rs7147231	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7150233	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7153497	0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs7160390	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8010558	0.85[EUR][1000 genomes]
rs8017258	0.81[AFR][1000 genomes]
rs8019762	0.88[AFR][1000 genomes]
rs8021889	0.85[EUR][1000 genomes]
rs9671406	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66077600-66114400	Weak transcription	Ovary	ovary
2	chr14:66079400-66104400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:66079600-66104400	Weak transcription	Gastric	stomach
4	chr14:66080800-66117600	Weak transcription	Left Ventricle	heart
5	chr14:66081400-66142200	Weak transcription	Thymus	Thymus
6	chr14:66081800-66112400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr14:66082200-66112600	Weak transcription	NHDF-Ad	bronchial
8	chr14:66082800-66117600	Weak transcription	Aorta	Aorta
9	chr14:66083200-66103200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr14:66084600-66104400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:66084800-66104000	Weak transcription	Stomach Mucosa	stomach
12	chr14:66086400-66119600	Weak transcription	Pancreas	Pancrea
13	chr14:66090600-66103200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr14:66090800-66145000	Weak transcription	Small Intestine	intestine
15	chr14:66091800-66104000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr14:66092800-66141000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr14:66093800-66104200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr14:66096000-66105400	Weak transcription	HUVEC	blood vessel
19	chr14:66096600-66103200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr14:66096800-66103000	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:66097800-66104600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr14:66098000-66104400	Weak transcription	NH-A	brain
23	chr14:66098000-66116000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr14:66098000-66125000	Weak transcription	Brain Substantia Nigra	brain
25	chr14:66098200-66103000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr14:66098200-66115200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr14:66098200-66118800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr14:66098400-66103200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr14:66099000-66104400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:66099000-66135200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr14:66099200-66104400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:66099200-66115200	Weak transcription	Placenta	Placenta
33	chr14:66099200-66135800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr14:66099200-66144000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr14:66099400-66104400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr14:66099400-66104400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr14:66099600-66103000	Weak transcription	Primary B cells from peripheral blood	blood
38	chr14:66099600-66103600	Weak transcription	Dnd41	blood
39	chr14:66100600-66160000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr14:66100800-66104400	Weak transcription	Fetal Thymus	thymus
41	chr14:66101400-66104600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr14:66102200-66104600	Weak transcription	Primary B cells from cord blood	blood
43	chr14:66102200-66104800	Weak transcription	Primary hematopoietic stem cells	blood
44	chr14:66102200-66108200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr14:66102800-66103200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr14:66102800-66103800	Enhancers	Primary T cells from cord blood	blood
47	chr14:66102800-66105200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr14:66102800-66105200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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