Variant report

Variant	rs1009465
Chromosome Location	chr14:65970370-65970371
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65964884..65967338-chr14:65969544..65973454,5	MCF-7	breast:
2	chr14:65948089..65950206-chr14:65970318..65973170,3	MCF-7	breast:
3	chr14:65964882..65967271-chr14:65968694..65970645,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10135969	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136752	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10150412	0.85[AFR][1000 genomes]
rs10152007	0.81[AFR][1000 genomes]
rs10467734	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873192	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158595	0.80[AFR][1000 genomes]
rs11158597	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11622767	0.89[EUR][1000 genomes]
rs11844682	0.85[AFR][1000 genomes]
rs11848209	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12433597	0.81[AFR][1000 genomes]
rs1889731	0.85[AFR][1000 genomes]
rs1953415	0.85[AFR][1000 genomes]
rs1953418	0.83[AFR][1000 genomes]
rs1956008	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1956009	0.80[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1959144	0.85[AFR][1000 genomes]
rs2180299	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2183277	0.81[AFR][1000 genomes]
rs2184601	0.84[AFR][1000 genomes]
rs2210805	0.88[AFR][1000 genomes]
rs2411354	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2411813	1.00[ASN][1000 genomes]
rs2411820	0.89[AFR][1000 genomes]
rs2898816	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2898818	0.81[AFR][1000 genomes]
rs2898820	0.83[AFR][1000 genomes]
rs3825639	0.81[AFR][1000 genomes]
rs4902399	0.89[AFR][1000 genomes]
rs4902408	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902413	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573612	0.89[AFR][1000 genomes]
rs7141367	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145759	0.83[AFR][1000 genomes]
rs7147624	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150094	0.89[AFR][1000 genomes]
rs7150648	0.80[AFR][1000 genomes]
rs7151148	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7153497	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7157109	0.85[AFR][1000 genomes]
rs7158153	0.81[AFR][1000 genomes]
rs7160390	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72714420	1.00[ASN][1000 genomes]
rs72714491	1.00[ASN][1000 genomes]
rs72714498	1.00[ASN][1000 genomes]
rs8003464	0.85[AFR][1000 genomes]
rs8010558	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8017880	0.85[AFR][1000 genomes]
rs9323460	0.81[AFR][1000 genomes]
rs9323461	0.81[AFR][1000 genomes]
rs9671406	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv456327	chr14:65955517-66052901	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv564951	chr14:65955517-66052901	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65945200-65980000	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr14:65950000-65973400	Weak transcription	Gastric	stomach
3	chr14:65953800-65970600	Weak transcription	Stomach Mucosa	stomach
4	chr14:65963600-65973800	Weak transcription	Primary B cells from cord blood	blood
5	chr14:65963600-65975000	Weak transcription	Fetal Intestine Small	intestine
6	chr14:65963600-65975800	Weak transcription	Primary T cells from cord blood	blood
7	chr14:65963600-65994400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:65965000-65973000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:65968200-65973600	Weak transcription	Small Intestine	intestine
10	chr14:65968200-65974800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr14:65968400-65973600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr14:65968400-65974200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:65969400-65970400	Flanking Active TSS	GM12878-XiMat	blood
14	chr14:65969600-65970400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr14:65969600-65970400	Enhancers	Brain Substantia Nigra	brain
16	chr14:65969600-65970600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr14:65969600-65970600	Enhancers	Brain Anterior Caudate	brain
18	chr14:65969600-65970600	Enhancers	Brain Hippocampus Middle	brain
19	chr14:65969800-65970600	Enhancers	Brain Cingulate Gyrus	brain
20	chr14:65969800-65970600	Enhancers	Colon Smooth Muscle	Colon
21	chr14:65969800-65973600	Weak transcription	Lung	lung
22	chr14:65969800-65978800	Weak transcription	Ovary	ovary
23	chr14:65969800-65980800	Weak transcription	Pancreas	Pancrea
24	chr14:65969800-65994600	Weak transcription	Left Ventricle	heart
25	chr14:65970000-65970600	Enhancers	Brain Angular Gyrus	brain
26	chr14:65970000-65970800	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr14:65970000-65971200	Enhancers	Fetal Brain Female	brain
28	chr14:65970000-65973800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr14:65970200-65970400	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr14:65970200-65975600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr14:65970200-65985400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr14:65970200-65985400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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