Variant report

Variant	rs11844682
Chromosome Location	chr14:65910844-65910845
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 123 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs1009465	0.85[AFR][1000 genomes]
rs10138671	0.85[CEU][hapmap]
rs10142283	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10143206	0.85[EUR][1000 genomes]
rs10144979	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10145146	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10148529	0.88[EUR][1000 genomes]
rs10150412	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152007	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10467734	0.86[AFR][1000 genomes]
rs10483776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10873190	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10873191	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1113962	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11158595	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11158597	0.82[AFR][1000 genomes]
rs11158603	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs11158604	0.90[EUR][1000 genomes]
rs11158605	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs11158607	0.93[CEU][hapmap]
rs11623662	0.89[CEU][hapmap]
rs11629437	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12433597	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12587057	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12885842	0.93[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17246091	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs17753508	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1889731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1953415	1.00[CEU][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1953418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958559	0.82[CEU][hapmap]
rs1958560	0.82[CEU][hapmap]
rs1959144	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1959145	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1999725	0.92[CEU][hapmap];0.84[AMR][1000 genomes]
rs2064695	0.85[CEU][hapmap]
rs2092914	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2149839	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2152374	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2183277	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2184601	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185454	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2210805	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2268955	0.82[CEU][hapmap]
rs2268956	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs2300864	0.85[EUR][1000 genomes]
rs2411356	0.89[CEU][hapmap];0.85[CHB][hapmap]
rs2411815	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2411820	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2411823	0.86[CEU][hapmap]
rs2898814	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2898816	0.81[AFR][1000 genomes]
rs2898818	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2898820	0.90[AFR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3759680	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs3825639	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4587890	0.85[CEU][hapmap]
rs4902399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902404	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs61987993	0.81[AFR][1000 genomes]
rs6573612	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6573614	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6573615	0.88[CEU][hapmap]
rs6573616	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6573617	0.80[EUR][1000 genomes]
rs6573618	0.90[EUR][1000 genomes]
rs6573619	0.89[EUR][1000 genomes]
rs7140341	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7140695	0.96[CEU][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7141367	0.80[AFR][1000 genomes]
rs7141536	0.96[CEU][hapmap];0.83[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7142906	0.88[AMR][1000 genomes]
rs7143318	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7144345	0.87[EUR][1000 genomes]
rs7144415	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7144971	0.85[EUR][1000 genomes]
rs7145500	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs7145759	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7146993	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7147002	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7147536	0.92[CEU][hapmap]
rs7147636	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs7150094	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7150448	0.96[CEU][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7150648	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7151561	0.96[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7153497	0.82[AFR][1000 genomes]
rs7157109	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7160780	0.88[CEU][hapmap]
rs72714423	0.93[ASN][1000 genomes]
rs72714428	0.96[ASN][1000 genomes]
rs72714433	0.96[ASN][1000 genomes]
rs72714436	0.96[ASN][1000 genomes]
rs72714439	0.96[ASN][1000 genomes]
rs72714440	0.96[ASN][1000 genomes]
rs72714442	0.96[ASN][1000 genomes]
rs72714447	0.96[ASN][1000 genomes]
rs72714460	0.89[ASN][1000 genomes]
rs72714461	0.89[ASN][1000 genomes]
rs72714468	0.89[ASN][1000 genomes]
rs72714478	0.89[ASN][1000 genomes]
rs72714482	0.86[ASN][1000 genomes]
rs72714483	0.82[ASN][1000 genomes]
rs72714484	0.81[ASN][1000 genomes]
rs8003464	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8005243	0.89[EUR][1000 genomes]
rs8007497	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs8010726	0.96[CEU][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8011224	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8012834	0.84[AMR][1000 genomes]
rs8013442	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs8017880	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs8022053	0.90[EUR][1000 genomes]
rs8022080	0.87[AMR][1000 genomes]
rs9323460	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323461	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9972106	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:65893000-65917600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
4	chr14:65898400-65935600	Weak transcription	Gastric	stomach
5	chr14:65899200-65913000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr14:65899600-65929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:65899800-65917600	Weak transcription	Thymus	Thymus
8	chr14:65900000-65917400	Weak transcription	Fetal Thymus	thymus
9	chr14:65900200-65912800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:65900400-65912800	Weak transcription	Brain Anterior Caudate	brain
11	chr14:65901200-65917800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:65901200-65920200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:65901800-65917600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:65901800-65920200	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:65902200-65927000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr14:65902400-65928400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr14:65903000-65911600	Weak transcription	Fetal Intestine Large	intestine
18	chr14:65903000-65911600	Weak transcription	Fetal Intestine Small	intestine
19	chr14:65903000-65917800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr14:65903200-65917600	Weak transcription	Fetal Stomach	stomach
21	chr14:65903200-65922600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr14:65903200-65925200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:65904200-65912600	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr14:65904600-65913000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr14:65905000-65917600	Weak transcription	Brain Germinal Matrix	brain
26	chr14:65905600-65911800	Weak transcription	Primary B cells from cord blood	blood
27	chr14:65905600-65916200	Weak transcription	Primary B cells from peripheral blood	blood
28	chr14:65905600-65918000	Weak transcription	Primary T cells from cord blood	blood
29	chr14:65905800-65918000	Weak transcription	Primary hematopoietic stem cells	blood
30	chr14:65905800-65936600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:65906000-65913000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr14:65906000-65913600	Weak transcription	Brain Angular Gyrus	brain
33	chr14:65906000-65923800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr14:65906000-65926800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr14:65906200-65911000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr14:65906200-65911800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr14:65906200-65912000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr14:65906200-65912800	Weak transcription	Brain Substantia Nigra	brain
39	chr14:65906200-65919800	Weak transcription	Ovary	ovary
40	chr14:65906200-65922000	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr14:65906400-65911000	Weak transcription	Dnd41	blood
42	chr14:65906600-65922800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr14:65907000-65920400	Weak transcription	K562	blood
44	chr14:65910000-65913600	Weak transcription	Small Intestine	intestine
45	chr14:65910200-65911200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr14:65910400-65911000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:65910400-65911800	Enhancers	HUVEC	blood vessel
48	chr14:65910400-65912200	ZNF genes & repeats	GM12878-XiMat	blood
49	chr14:65910600-65911600	Enhancers	NHEK	skin
50	chr14:65910600-65913600	Weak transcription	Left Ventricle	heart

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