Variant report

Variant	rs72714423
Chromosome Location	chr14:65863561-65863562
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65862260..65865116-chr14:65877901..65880398,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000033170	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10144979	0.86[ASN][1000 genomes]
rs10150412	0.93[ASN][1000 genomes]
rs10483776	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1113962	0.82[ASN][1000 genomes]
rs11844682	0.93[ASN][1000 genomes]
rs12433597	0.80[ASN][1000 genomes]
rs17753508	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1889731	0.93[ASN][1000 genomes]
rs1953415	0.81[ASN][1000 genomes]
rs1953418	0.93[ASN][1000 genomes]
rs1959144	0.93[ASN][1000 genomes]
rs2183277	0.80[ASN][1000 genomes]
rs2184601	0.93[ASN][1000 genomes]
rs2210805	0.93[ASN][1000 genomes]
rs2411820	0.93[ASN][1000 genomes]
rs2898814	0.80[ASN][1000 genomes]
rs2898820	0.96[ASN][1000 genomes]
rs34640387	0.85[EUR][1000 genomes]
rs34772005	0.85[EUR][1000 genomes]
rs3759680	0.96[ASN][1000 genomes]
rs3825639	0.80[ASN][1000 genomes]
rs4902399	0.87[ASN][1000 genomes]
rs6573612	0.93[ASN][1000 genomes]
rs6573614	0.87[ASN][1000 genomes]
rs7145759	0.96[ASN][1000 genomes]
rs7147002	0.80[ASN][1000 genomes]
rs7150094	0.93[ASN][1000 genomes]
rs7150648	0.93[ASN][1000 genomes]
rs7157109	0.93[ASN][1000 genomes]
rs7158153	0.80[ASN][1000 genomes]
rs72712500	0.92[EUR][1000 genomes]
rs72714428	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714433	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714436	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714439	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714440	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714442	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714447	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714460	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72714461	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72714468	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72714478	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72714482	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72714483	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72714484	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72714499	0.85[EUR][1000 genomes]
rs72716407	0.85[EUR][1000 genomes]
rs72716408	0.85[EUR][1000 genomes]
rs8003464	0.93[ASN][1000 genomes]
rs8017880	0.93[ASN][1000 genomes]
rs9323460	0.93[ASN][1000 genomes]
rs9323461	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
6	nsv1044363	chr14:65850832-65870128	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv510639	chr14:65853883-65884315	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65860200-65874600	Weak transcription	Stomach Mucosa	stomach
2	chr14:65862600-65863600	ZNF genes & repeats	Primary B cells from peripheral blood	blood

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