Variant report

Variant	rs17753508
Chromosome Location	chr14:66057452-66057453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:66055552..66057835-chr14:66062107..66064874,2	MCF-7	breast:
2	chr14:66045273..66047122-chr14:66055523..66058182,2	MCF-7	breast:
3	chr14:66051562..66054296-chr14:66056670..66058762,2	MCF-7	breast:

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10143206	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs10144979	1.00[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs10145146	0.87[ASN][1000 genomes]
rs10150412	0.84[ASN][1000 genomes]
rs10483776	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1113962	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs11158603	1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[ASN][1000 genomes]
rs11158604	0.83[ASN][1000 genomes]
rs1121885	1.00[CHB][hapmap]
rs11844682	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs12433597	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12587057	0.87[ASN][1000 genomes]
rs17246091	0.82[CHB][hapmap]
rs1889731	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1953415	0.83[ASN][1000 genomes]
rs1953418	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs1959144	1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2183277	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2184601	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2210805	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2268956	1.00[CHB][hapmap];1.00[CHD][hapmap];0.82[ASN][1000 genomes]
rs2268959	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2411356	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs2411820	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2898814	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2898820	0.81[ASN][1000 genomes]
rs34640387	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34772005	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35949016	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3759680	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap]
rs3825639	1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4902399	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs60708728	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61987993	0.87[ASN][1000 genomes]
rs6573612	0.84[ASN][1000 genomes]
rs6573614	0.89[ASN][1000 genomes]
rs6573616	1.00[CHB][hapmap];0.92[CHD][hapmap];0.82[ASN][1000 genomes]
rs6573618	0.84[ASN][1000 genomes]
rs7140341	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs7144345	1.00[CHB][hapmap]
rs7144971	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7145759	1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs7147002	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7150094	0.84[ASN][1000 genomes]
rs7150648	0.84[ASN][1000 genomes]
rs7157109	1.00[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7158153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs72714423	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72714428	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72714433	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72714436	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72714439	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72714440	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72714442	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72714447	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72714460	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72714461	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72714468	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72714478	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72714482	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72714483	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72714484	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72714499	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72716407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72716408	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72716418	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72716420	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72716421	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72716430	0.84[EUR][1000 genomes]
rs8003464	0.84[ASN][1000 genomes]
rs8017880	0.84[ASN][1000 genomes]
rs8019762	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs9323460	0.84[ASN][1000 genomes]
rs9323461	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv832819	chr14:65957949-66106019	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65995400-66061000	Weak transcription	Gastric	stomach
2	chr14:66032000-66060200	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:66032600-66060800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:66039800-66058000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:66039800-66061200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:66041000-66059000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr14:66041000-66060800	Weak transcription	Dnd41	blood
8	chr14:66041200-66060800	Weak transcription	GM12878-XiMat	blood
9	chr14:66041200-66061000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr14:66043800-66061000	Weak transcription	Fetal Intestine Small	intestine
11	chr14:66049800-66060800	Weak transcription	Primary B cells from cord blood	blood
12	chr14:66052400-66061000	Weak transcription	Stomach Mucosa	stomach
13	chr14:66054800-66058000	Weak transcription	Primary T cells from cord blood	blood
14	chr14:66055200-66061000	Weak transcription	Brain Hippocampus Middle	brain
15	chr14:66055400-66060600	Weak transcription	HepG2	liver
16	chr14:66055400-66060800	Weak transcription	Liver	Liver
17	chr14:66056000-66060800	Weak transcription	Brain Substantia Nigra	brain
18	chr14:66056000-66061000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:66056600-66058600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr14:66057400-66057600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr14:66057400-66059600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr14:66057400-66059600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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