Variant report

Variant	rs2152374
Chromosome Location	chr14:65873447-65873448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65721681..65725033-chr14:65872611..65875727,3	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10150412	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10152007	0.80[EUR][1000 genomes]
rs10873190	0.81[EUR][1000 genomes]
rs11158595	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11629437	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11844682	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12433597	0.80[EUR][1000 genomes]
rs12587057	0.82[EUR][1000 genomes]
rs1889731	0.84[EUR][1000 genomes]
rs1953418	0.84[EUR][1000 genomes]
rs1959144	0.83[EUR][1000 genomes]
rs1959145	0.82[EUR][1000 genomes]
rs2149839	0.81[EUR][1000 genomes]
rs2183277	0.80[EUR][1000 genomes]
rs2184601	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2185454	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2210805	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2268956	0.81[EUR][1000 genomes]
rs2411820	0.83[AFR][1000 genomes]
rs2898818	0.82[EUR][1000 genomes]
rs2898820	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3825639	0.80[EUR][1000 genomes]
rs4902399	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs4902404	0.81[EUR][1000 genomes]
rs6573612	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6573614	0.80[EUR][1000 genomes]
rs6573616	0.80[EUR][1000 genomes]
rs6573618	0.82[EUR][1000 genomes]
rs6573619	0.81[EUR][1000 genomes]
rs7140695	0.82[EUR][1000 genomes]
rs7141536	0.82[EUR][1000 genomes]
rs7145500	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7145759	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7146993	0.81[EUR][1000 genomes]
rs7147002	0.80[EUR][1000 genomes]
rs7147536	0.85[AMR][1000 genomes]
rs7150094	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7150448	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7150648	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7151561	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7157109	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8003464	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8005243	0.81[EUR][1000 genomes]
rs8010726	0.80[EUR][1000 genomes]
rs8013442	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8017880	0.84[EUR][1000 genomes]
rs8019762	0.81[EUR][1000 genomes]
rs8022053	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9323460	0.81[EUR][1000 genomes]
rs9323461	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
6	nsv510639	chr14:65853883-65884315	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65860200-65874600	Weak transcription	Stomach Mucosa	stomach
2	chr14:65864400-65878400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:65869000-65877800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:65870400-65877600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:65870400-65877600	Weak transcription	NHDF-Ad	bronchial
6	chr14:65870600-65877800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:65870800-65878200	Weak transcription	Ovary	ovary
8	chr14:65871000-65877400	Weak transcription	Primary B cells from cord blood	blood
9	chr14:65873000-65877800	Weak transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links