Variant report

Variant	rs72726477
Chromosome Location	chr4:143517452-143517453
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143516751..143518964-chr4:143518967..143521709,2	MCF-7	breast:
2	chr4:143388165..143401257-chr4:143512284..143528837,40	MCF-7	breast:
3	chr4:143515194..143518460-chr4:143519756..143524261,5	MCF-7	breast:
4	chr4:143391752..143397700-chr4:143513549..143524281,24	MCF-7	breast:
5	chr4:143509941..143511857-chr4:143515159..143518167,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10020797	0.86[ASN][1000 genomes]
rs1017527	0.91[ASN][1000 genomes]
rs1019643	0.86[ASN][1000 genomes]
rs10857396	0.97[ASN][1000 genomes]
rs11100753	0.81[ASN][1000 genomes]
rs1116689	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11937786	0.86[ASN][1000 genomes]
rs11942593	0.82[ASN][1000 genomes]
rs12163905	0.92[ASN][1000 genomes]
rs12504610	0.86[ASN][1000 genomes]
rs12508480	0.84[ASN][1000 genomes]
rs12509465	0.92[ASN][1000 genomes]
rs12645567	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12650777	0.86[ASN][1000 genomes]
rs13102826	0.92[ASN][1000 genomes]
rs13120964	0.97[ASN][1000 genomes]
rs13129274	0.92[ASN][1000 genomes]
rs13147451	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13149611	0.92[ASN][1000 genomes]
rs13150837	0.87[ASN][1000 genomes]
rs1373035	0.82[ASN][1000 genomes]
rs1373038	0.92[ASN][1000 genomes]
rs1373039	0.92[ASN][1000 genomes]
rs1373040	0.95[ASN][1000 genomes]
rs1443184	0.92[ASN][1000 genomes]
rs1443189	0.92[ASN][1000 genomes]
rs1443190	0.95[ASN][1000 genomes]
rs17016514	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17729514	0.85[AFR][1000 genomes]
rs1814061	0.92[ASN][1000 genomes]
rs1822363	0.92[ASN][1000 genomes]
rs1838085	0.92[ASN][1000 genomes]
rs1838087	0.92[ASN][1000 genomes]
rs2008423	0.95[ASN][1000 genomes]
rs2120159	0.92[ASN][1000 genomes]
rs2120160	0.91[ASN][1000 genomes]
rs2197215	0.95[ASN][1000 genomes]
rs3967128	0.92[ASN][1000 genomes]
rs4690722	0.87[ASN][1000 genomes]
rs6537122	0.92[ASN][1000 genomes]
rs6845652	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72726495	0.90[AFR][1000 genomes]
rs72728615	0.80[ASN][1000 genomes]
rs7376422	0.97[ASN][1000 genomes]
rs7434560	0.92[ASN][1000 genomes]
rs7437824	0.84[ASN][1000 genomes]
rs745719	0.90[ASN][1000 genomes]
rs7670457	0.91[ASN][1000 genomes]
rs7671783	0.91[ASN][1000 genomes]
rs7675305	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7682731	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7685002	0.92[ASN][1000 genomes]
rs7688435	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs894584	0.92[ASN][1000 genomes]
rs894585	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs962372	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143489800-143519400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143490800-143519200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr4:143506400-143518000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:143507400-143520200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:143507600-143519200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:143508200-143520000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr4:143511800-143521200	Weak transcription	Primary T cells from cord blood	blood
8	chr4:143514600-143519800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr4:143514800-143518000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr4:143514800-143519800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr4:143515000-143519400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:143515200-143518000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr4:143515600-143518400	Enhancers	Liver	Liver
14	chr4:143516000-143523800	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:143516400-143520400	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:143516800-143518200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr4:143517000-143518000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr4:143517000-143518000	Enhancers	Pancreas	Pancrea
19	chr4:143517000-143530200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr4:143517200-143519400	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:143517400-143517600	Enhancers	Left Ventricle	heart
22	chr4:143517400-143539400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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