Variant report

Variant	rs7376422
Chromosome Location	chr4:143536916-143536917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:143488759..143491260-chr4:143536558..143538874,2	MCF-7	breast:
2	chr4:143408585..143411765-chr4:143534873..143537251,4	MCF-7	breast:
3	chr4:143535928..143538576-chr4:143767240..143768815,2	MCF-7	breast:
4	chr4:143469197..143474225-chr4:143534708..143538333,6	MCF-7	breast:
5	chr4:143522544..143524167-chr4:143536541..143538148,2	MCF-7	breast:
6	chr4:143536204..143537085-chr4:143957486..143958196,6	MCF-7	breast:
7	chr4:143371522..143373447-chr4:143534155..143537026,2	MCF-7	breast:
8	chr4:143536517..143538495-chr4:143637512..143640289,2	MCF-7	breast:
9	chr4:143388945..143399475-chr4:143525396..143540220,51	MCF-7	breast:
10	chr4:143536781..143539215-chr4:143551772..143553795,2	MCF-7	breast:
11	chr4:143536204..143537085-chr4:143957648..143958196,3	MCF-7	breast:
12	chr4:143520357..143522520-chr4:143535203..143538604,3	MCF-7	breast:
13	chr4:143451651..143452601-chr4:143536185..143537147,3	MCF-7	breast:
14	chr4:143469254..143471063-chr4:143535925..143538743,3	MCF-7	breast:
15	chr4:143536310..143537064-chr4:143957404..143958197,5	MCF-7	breast:
16	chr4:143517546..143521080-chr4:143535706..143539870,4	MCF-7	breast:
17	chr4:143420095..143422300-chr4:143536470..143540708,3	MCF-7	breast:
18	chr4:143387939..143398265-chr4:143528932..143544358,55	MCF-7	breast:
19	chr4:143535273..143539133-chr4:143641663..143644812,3	MCF-7	breast:
20	chr4:143535588..143538325-chr4:143625041..143627552,2	MCF-7	breast:
21	chr4:143521828..143522757-chr4:143536158..143537238,4	MCF-7	breast:
22	chr4:143535438..143537079-chr4:143616792..143619386,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10020797	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1017527	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1019643	0.84[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10857396	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100753	0.84[ASN][1000 genomes]
rs1116689	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11937786	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11942593	0.85[ASN][1000 genomes]
rs11944455	0.82[CHB][hapmap]
rs12163905	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12504610	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12508480	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12509465	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12645567	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12650777	0.89[CEU][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13102826	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13120964	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13129274	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13147451	0.83[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13149611	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13150837	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1373035	0.85[ASN][1000 genomes]
rs1373038	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1373039	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1373040	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1425522	0.84[CEU][hapmap];0.90[CHB][hapmap];0.81[EUR][1000 genomes]
rs1425523	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[YRI][hapmap]
rs1443184	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1443188	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1443189	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1443190	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17016514	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1814061	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1822363	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1838085	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1838087	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2008423	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2081474	0.84[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2120159	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2120160	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2120162	0.84[EUR][1000 genomes]
rs2197215	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3967128	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4690722	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6537122	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6839894	0.90[CHB][hapmap]
rs6845652	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72726477	0.97[ASN][1000 genomes]
rs72728615	0.83[ASN][1000 genomes]
rs72728621	0.81[ASN][1000 genomes]
rs7434560	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7437824	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs745719	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7670457	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7671783	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7675305	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7682731	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7685002	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7685086	0.82[EUR][1000 genomes]
rs7688435	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs894584	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs894585	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs962372	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs978361	0.92[CEU][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461660	chr4:143437219-143538179	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv595605	chr4:143437219-143538179	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143517400-143539400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:143531200-143538600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr4:143532600-143540200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr4:143534000-143537800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr4:143534000-143538400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:143534000-143538600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:143534200-143538600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:143534800-143537000	Enhancers	Hela-S3	cervix
9	chr4:143534800-143537200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:143535000-143537000	Enhancers	NHEK	skin
11	chr4:143535200-143537000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr4:143535200-143537200	Enhancers	NH-A	brain
13	chr4:143535200-143537400	Enhancers	A549	lung
14	chr4:143536000-143537400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:143536400-143537400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:143536400-143537400	Enhancers	HMEC	breast
17	chr4:143536600-143537000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr4:143536600-143537000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:143536600-143537000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr4:143536600-143537800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:143536800-143537000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:143536800-143537000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr4:143536800-143537200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:143536800-143537400	Enhancers	Left Ventricle	heart
25	chr4:143536800-143537600	Enhancers	Osteobl	bone
26	chr4:143536800-143538400	Weak transcription	Aorta	Aorta

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