Variant report

Variant	rs1443188
Chromosome Location	chr4:143621356-143621357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143588349..143590393-chr4:143619643..143621785,2	MCF-7	breast:
2	chr4:143620976..143623846-chr4:143624142..143626240,2	MCF-7	breast:
3	chr4:143393648..143395984-chr4:143620297..143622044,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10020797	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1017527	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1031104	0.87[ASN][1000 genomes]
rs10857396	0.82[EUR][1000 genomes]
rs11100753	0.86[ASN][1000 genomes]
rs1116690	0.80[ASN][1000 genomes]
rs11937786	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11942593	0.87[ASN][1000 genomes]
rs11944455	0.84[ASN][1000 genomes]
rs12163905	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12500698	0.87[ASN][1000 genomes]
rs12504610	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12508480	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12509465	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12650777	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13102826	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13109603	0.85[ASN][1000 genomes]
rs13109664	0.85[ASN][1000 genomes]
rs13119090	0.85[ASN][1000 genomes]
rs13120964	0.82[EUR][1000 genomes]
rs13129274	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13149611	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13150837	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1364922	0.83[ASN][1000 genomes]
rs1373035	0.87[ASN][1000 genomes]
rs1373036	0.82[ASN][1000 genomes]
rs1373038	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373039	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373040	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1373041	0.87[ASN][1000 genomes]
rs1443184	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1443187	0.85[ASN][1000 genomes]
rs1443189	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1443190	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17016514	0.92[CEU][hapmap];0.82[ASN][1000 genomes]
rs1814061	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1822363	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1838085	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1838087	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2008423	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2081474	0.83[CEU][hapmap]
rs2120159	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2120160	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2197215	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3967128	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4690722	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6537122	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6537123	0.86[ASN][1000 genomes]
rs6830053	0.87[ASN][1000 genomes]
rs6830886	0.87[ASN][1000 genomes]
rs6839894	0.85[ASN][1000 genomes]
rs72728615	0.84[ASN][1000 genomes]
rs72728621	0.83[ASN][1000 genomes]
rs7376422	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs7434560	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7434705	0.85[ASN][1000 genomes]
rs7437824	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7441478	0.85[ASN][1000 genomes]
rs745719	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7670457	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7671783	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7680076	0.85[ASN][1000 genomes]
rs7680631	0.87[ASN][1000 genomes]
rs7685002	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7685086	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7695514	0.85[ASN][1000 genomes]
rs7698691	0.82[ASN][1000 genomes]
rs894584	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs894585	0.82[ASN][1000 genomes]
rs962372	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs978361	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs979194	0.83[ASN][1000 genomes]
rs979195	0.83[ASN][1000 genomes]
rs979196	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3467400	chr4:143615840-143621513	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3467401	chr4:143615840-143621513	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143616000-143628800	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr4:143616800-143621600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr4:143616800-143629600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr4:143617000-143624200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr4:143617800-143626400	Weak transcription	Psoas Muscle	Psoas
6	chr4:143618000-143624800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:143618000-143625000	Weak transcription	Aorta	Aorta
8	chr4:143618000-143625200	Enhancers	Primary hematopoietic stem cells	blood
9	chr4:143618200-143621400	Enhancers	Primary T cells from cord blood	blood
10	chr4:143618600-143624800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:143619000-143622200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr4:143620200-143622200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr4:143620400-143621800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:143620600-143621400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr4:143620600-143622200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:143620800-143622000	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr4:143620800-143622000	Weak transcription	Fetal Thymus	thymus
18	chr4:143620800-143642000	Weak transcription	Fetal Heart	heart
19	chr4:143621000-143621600	Enhancers	Dnd41	blood
20	chr4:143621000-143622600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr4:143621000-143624200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr4:143621200-143621400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr4:143621200-143621400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:143621200-143622200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr4:143621200-143622200	Weak transcription	Thymus	Thymus

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