Variant report

Variant	rs978361
Chromosome Location	chr4:143618753-143618754
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143610637..143613671-chr4:143616411..143618882,3	MCF-7	breast:
2	chr4:143535438..143537079-chr4:143616792..143619386,2	MCF-7	breast:
3	chr4:143274014..143275963-chr4:143618160..143619947,2	MCF-7	breast:
4	chr4:143393327..143398147-chr4:143615863..143619957,7	MCF-7	breast:
5	chr4:143393259..143398108-chr4:143615372..143620802,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10020797	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1017527	1.00[CEU][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1019643	0.81[TSI][hapmap]
rs1031104	0.90[CHB][hapmap];1.00[CHD][hapmap];0.87[ASN][1000 genomes]
rs10857396	0.82[EUR][1000 genomes]
rs10857399	0.90[CHB][hapmap]
rs11100753	0.86[ASN][1000 genomes]
rs1116690	0.80[ASN][1000 genomes]
rs11937786	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11942593	0.87[ASN][1000 genomes]
rs11943397	0.81[CHB][hapmap];0.88[CHD][hapmap]
rs11944455	0.84[ASN][1000 genomes]
rs12163905	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12500698	0.87[ASN][1000 genomes]
rs12504610	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12508480	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12509465	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12650777	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13102826	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13109603	0.85[ASN][1000 genomes]
rs13109664	0.85[ASN][1000 genomes]
rs13119090	0.85[ASN][1000 genomes]
rs13120964	0.82[EUR][1000 genomes]
rs13129274	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13147451	0.90[JPT][hapmap]
rs13149611	1.00[CEU][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13150837	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1364922	0.83[ASN][1000 genomes]
rs1373035	0.87[ASN][1000 genomes]
rs1373036	0.82[ASN][1000 genomes]
rs1373038	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373039	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1373040	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1373041	0.87[ASN][1000 genomes]
rs1425522	0.81[TSI][hapmap]
rs1441417	0.90[CHB][hapmap]
rs1443184	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1443187	0.86[CHB][hapmap];0.81[CHD][hapmap];0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1443188	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1443189	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1443190	1.00[CEU][hapmap];0.94[CHD][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17016514	0.92[CEU][hapmap];0.92[JPT][hapmap];0.82[ASN][1000 genomes]
rs17016768	0.84[JPT][hapmap]
rs1814061	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1822363	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1838085	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1838087	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1899565	0.81[CHB][hapmap]
rs2008423	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2017146	0.83[CHD][hapmap]
rs2081474	0.84[CEU][hapmap]
rs2120158	0.81[CHB][hapmap];0.83[CHD][hapmap]
rs2120159	1.00[CEU][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2120160	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2197215	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2874870	0.83[CHD][hapmap]
rs331945	0.84[JPT][hapmap]
rs3967128	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4690722	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6537122	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6537123	0.86[ASN][1000 genomes]
rs6830053	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs6830886	0.87[ASN][1000 genomes]
rs6839158	0.90[CHB][hapmap]
rs6839894	0.85[ASN][1000 genomes]
rs72728615	0.84[ASN][1000 genomes]
rs72728621	0.83[ASN][1000 genomes]
rs7376422	0.92[CEU][hapmap];0.92[JPT][hapmap];0.82[EUR][1000 genomes]
rs7434560	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7434705	0.85[ASN][1000 genomes]
rs7437824	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7441478	0.85[ASN][1000 genomes]
rs745719	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7666140	0.84[JPT][hapmap]
rs7670457	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7671783	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7675305	0.94[CHD][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap]
rs7680076	0.85[ASN][1000 genomes]
rs7680631	0.87[ASN][1000 genomes]
rs7682731	0.94[CHD][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap]
rs7685002	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7685086	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7688435	0.94[CHD][hapmap];0.92[JPT][hapmap];0.91[TSI][hapmap]
rs7695514	0.85[ASN][1000 genomes]
rs7698691	0.82[ASN][1000 genomes]
rs894584	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs894585	0.82[ASN][1000 genomes]
rs962372	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs979194	0.83[ASN][1000 genomes]
rs979195	0.83[ASN][1000 genomes]
rs979196	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3467400	chr4:143615840-143621513	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3467401	chr4:143615840-143621513	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv441917	chr4:143615874-143619949	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv19572	chr4:143616010-143621320	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143615800-143620200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
2	chr4:143616000-143620600	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr4:143616000-143628800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr4:143616400-143620200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:143616800-143621000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr4:143616800-143621600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr4:143616800-143629600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr4:143617000-143618800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr4:143617000-143624200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr4:143617400-143619000	Enhancers	Hela-S3	cervix
11	chr4:143617800-143620400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:143617800-143621200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr4:143617800-143626400	Weak transcription	Psoas Muscle	Psoas
14	chr4:143618000-143619800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr4:143618000-143624800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr4:143618000-143625000	Weak transcription	Aorta	Aorta
17	chr4:143618000-143625200	Enhancers	Primary hematopoietic stem cells	blood
18	chr4:143618200-143621200	Enhancers	Thymus	Thymus
19	chr4:143618200-143621400	Enhancers	Primary T cells from cord blood	blood
20	chr4:143618400-143618800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:143618400-143618800	Flanking Active TSS	Dnd41	blood
22	chr4:143618600-143618800	Enhancers	Colon Smooth Muscle	Colon
23	chr4:143618600-143619600	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr4:143618600-143619600	Weak transcription	Fetal Heart	heart
25	chr4:143618600-143619600	Weak transcription	Fetal Thymus	thymus
26	chr4:143618600-143619800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr4:143618600-143624800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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