Variant report

Variant	rs894585
Chromosome Location	chr4:143541394-143541395
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:143539957..143541705-chr4:143544146..143545752,2	MCF-7	breast:
2	chr4:143387939..143398265-chr4:143528932..143544358,55	MCF-7	breast:
3	chr4:143540499..143543272-chr4:143549773..143551705,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109452	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10020797	0.91[ASN][1000 genomes]
rs1017527	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1019643	0.82[ASN][1000 genomes]
rs10857396	0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11100753	0.86[ASN][1000 genomes]
rs1116689	0.95[ASN][1000 genomes]
rs11937786	0.91[ASN][1000 genomes]
rs11942593	0.87[ASN][1000 genomes]
rs12163905	0.97[ASN][1000 genomes]
rs12504610	0.91[ASN][1000 genomes]
rs12508480	0.88[ASN][1000 genomes]
rs12509465	0.97[ASN][1000 genomes]
rs12645567	0.95[ASN][1000 genomes]
rs12650777	0.91[ASN][1000 genomes]
rs13102826	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs13120964	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13129274	0.97[ASN][1000 genomes]
rs13147451	0.95[ASN][1000 genomes]
rs13149611	0.97[ASN][1000 genomes]
rs13150837	0.92[ASN][1000 genomes]
rs1373035	0.87[ASN][1000 genomes]
rs1373038	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1373039	0.97[ASN][1000 genomes]
rs1373040	1.00[ASN][1000 genomes]
rs1443184	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1443188	0.82[ASN][1000 genomes]
rs1443189	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1443190	1.00[ASN][1000 genomes]
rs17016514	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17729514	0.85[AFR][1000 genomes]
rs1814061	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1822363	0.97[ASN][1000 genomes]
rs1838085	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1838087	0.97[ASN][1000 genomes]
rs2008423	1.00[ASN][1000 genomes]
rs2120159	0.97[ASN][1000 genomes]
rs2120160	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2197215	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3967128	0.97[ASN][1000 genomes]
rs4690722	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6537122	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6845652	0.95[ASN][1000 genomes]
rs72726477	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72726495	0.90[AFR][1000 genomes]
rs72728615	0.85[ASN][1000 genomes]
rs72728621	0.84[ASN][1000 genomes]
rs7376422	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7434560	0.97[ASN][1000 genomes]
rs7437824	0.88[ASN][1000 genomes]
rs745719	0.95[ASN][1000 genomes]
rs7670457	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7671783	0.96[ASN][1000 genomes]
rs7675305	0.95[ASN][1000 genomes]
rs7682731	0.95[ASN][1000 genomes]
rs7685002	0.97[ASN][1000 genomes]
rs7685086	0.82[ASN][1000 genomes]
rs7688435	0.95[ASN][1000 genomes]
rs894584	0.97[ASN][1000 genomes]
rs962372	0.97[ASN][1000 genomes]
rs978361	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143537000-143575800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143538000-143541800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr4:143538600-143543800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:143538800-143548800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:143539800-143544000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:143540800-143541800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--

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