Variant report
| Variant | rs72729689 |
|---|---|
| Chromosome Location | chr1:102359976-102359977 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-S1PR1-13 | chr1:102358613-102360299 | NONHSAT004867 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs12144932 | 1.00[AFR][1000 genomes] |
| rs12731963 | 1.00[AFR][1000 genomes] |
| rs1415099 | 1.00[ASN][1000 genomes] |
| rs1415107 | 1.00[AFR][1000 genomes] |
| rs1577717 | 1.00[ASN][1000 genomes] |
| rs17125616 | 1.00[ASN][1000 genomes] |
| rs17430580 | 1.00[ASN][1000 genomes] |
| rs17431961 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17432141 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17470860 | 1.00[ASN][1000 genomes] |
| rs1856037 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1981158 | 1.00[ASN][1000 genomes] |
| rs58587209 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6682150 | 1.00[ASN][1000 genomes] |
| rs6694948 | 1.00[ASN][1000 genomes] |
| rs6695052 | 1.00[ASN][1000 genomes] |
| rs9943151 | 1.00[ASN][1000 genomes] |
| rs9943277 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv522921 | chr1:102170295-102876392 | Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv522156 | chr1:102309649-102421714 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
