Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10874521	0.85[YRI][hapmap]
rs11164315	0.85[YRI][hapmap]
rs11164316	0.94[EUR][1000 genomes]
rs11164317	0.94[EUR][1000 genomes]
rs1120398	0.93[EUR][1000 genomes]
rs12062147	0.86[YRI][hapmap]
rs1319726	0.92[CEU][hapmap];0.93[EUR][1000 genomes]
rs1336792	0.92[EUR][1000 genomes]
rs1415098	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs1415099	1.00[ASN][1000 genomes]
rs1415100	0.94[EUR][1000 genomes]
rs1539091	1.00[CHB][hapmap]
rs1577717	1.00[ASN][1000 genomes]
rs1591591	0.95[EUR][1000 genomes]
rs17430580	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17431961	1.00[ASN][1000 genomes]
rs17432141	1.00[ASN][1000 genomes]
rs17470860	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1856037	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1981158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050571	0.94[EUR][1000 genomes]
rs2050572	0.92[EUR][1000 genomes]
rs4642900	0.93[EUR][1000 genomes]
rs4907956	1.00[CHB][hapmap]
rs6577276	0.93[EUR][1000 genomes]
rs6577278	0.93[EUR][1000 genomes]
rs6659134	0.94[EUR][1000 genomes]
rs6661052	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs6682150	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6693196	0.93[EUR][1000 genomes]
rs6694755	0.93[EUR][1000 genomes]
rs6694948	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6695052	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6702995	0.93[EUR][1000 genomes]
rs72729689	1.00[ASN][1000 genomes]
rs7536632	1.00[CHB][hapmap]
rs9943151	1.00[ASN][1000 genomes]
rs9943277	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102327200-102330400	Weak transcription	Fetal Intestine Small	intestine

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