Variant report
| Variant | rs1856037 |
|---|---|
| Chromosome Location | chr1:102346105-102346106 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
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| No data |
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| Variant related genes | Relation type |
|---|---|
| ENSG00000271277 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs1415099 | 1.00[ASN][1000 genomes] |
| rs1539091 | 0.84[CEU][hapmap];1.00[CHB][hapmap] |
| rs1577717 | 1.00[ASN][1000 genomes] |
| rs17125616 | 1.00[ASN][1000 genomes] |
| rs17430580 | 1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17431961 | 0.82[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17432141 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17470860 | 1.00[CHB][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1981158 | 1.00[ASN][1000 genomes] |
| rs4907956 | 1.00[CHB][hapmap] |
| rs58587209 | 0.82[EUR][1000 genomes] |
| rs6682150 | 1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6694948 | 1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6695052 | 1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72729689 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7536632 | 1.00[CHB][hapmap] |
| rs9943151 | 1.00[ASN][1000 genomes] |
| rs9943277 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv522921 | chr1:102170295-102876392 | Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv522156 | chr1:102309649-102421714 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv946102 | chr1:102345540-102348085 | Inactive region | TF binding regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
