Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-S1PR1-13	chr1:102358613-102360299	NONHSAT004867
2	lnc-S1PR1-13	chr1:102358661-102359603	NONHSAT004869

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12130645	1.00[YRI][hapmap]
rs12144932	1.00[AFR][1000 genomes]
rs12731963	1.00[AFR][1000 genomes]
rs1415099	1.00[ASN][1000 genomes]
rs1415107	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1539091	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1577717	1.00[ASN][1000 genomes]
rs17125616	1.00[ASN][1000 genomes]
rs17430580	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17431961	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17470860	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1856037	0.83[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981158	1.00[ASN][1000 genomes]
rs4907956	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[LWK][hapmap]
rs58587209	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682150	1.00[CHB][hapmap];0.80[MEX][hapmap];1.00[ASN][1000 genomes]
rs6694948	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6695052	1.00[CHB][hapmap];0.80[MEX][hapmap];1.00[ASN][1000 genomes]
rs72729689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7536632	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[GIH][hapmap]
rs9943151	1.00[ASN][1000 genomes]
rs9943277	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17432141	OLFM3	cis	cerebellum	SCAN
rs17432141	AMY2B	cis	cerebellum	SCAN
rs17432141	NIN	trans	parietal	SCAN
rs17432141	PALMD	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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