Variant report

Variant	rs72731934
Chromosome Location	chr15:57411616-57411617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57410833..57413680-chr15:57416630..57418139,2	K562	blood:
2	chr15:57209351..57211172-chr15:57411034..57413159,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137871	Chromatin interaction
ENSG00000140262	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1015967	0.80[EUR][1000 genomes]
rs10438332	0.80[EUR][1000 genomes]
rs11071302	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11071307	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11071310	0.81[EUR][1000 genomes]
rs1139006	0.80[EUR][1000 genomes]
rs11632502	0.80[EUR][1000 genomes]
rs11632526	0.80[EUR][1000 genomes]
rs11636655	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12148850	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12324235	0.81[EUR][1000 genomes]
rs12591367	0.80[EUR][1000 genomes]
rs12593843	0.91[EUR][1000 genomes]
rs1346880	0.81[EUR][1000 genomes]
rs1367491	0.81[EUR][1000 genomes]
rs1631079	0.80[EUR][1000 genomes]
rs1652738	0.80[EUR][1000 genomes]
rs1652739	0.80[EUR][1000 genomes]
rs17239222	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17819940	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17820018	0.81[EUR][1000 genomes]
rs1820996	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1870870	0.83[EUR][1000 genomes]
rs2126402	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2169468	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2248620	0.84[EUR][1000 genomes]
rs2252289	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2290939	0.84[EUR][1000 genomes]
rs2435905	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2464427	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2464428	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2470080	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2470081	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2470083	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2470084	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2470117	0.81[EUR][1000 genomes]
rs2566844	0.80[EUR][1000 genomes]
rs2566846	0.80[EUR][1000 genomes]
rs2566856	0.84[EUR][1000 genomes]
rs2585076	0.80[EUR][1000 genomes]
rs2585116	0.80[EUR][1000 genomes]
rs2591062	0.84[EUR][1000 genomes]
rs2591066	0.84[EUR][1000 genomes]
rs2593217	0.85[EUR][1000 genomes]
rs2593221	0.85[EUR][1000 genomes]
rs2593223	0.84[EUR][1000 genomes]
rs2703588	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2703599	0.85[EUR][1000 genomes]
rs2703600	0.84[EUR][1000 genomes]
rs2733187	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2733304	0.82[EUR][1000 genomes]
rs2733309	0.81[EUR][1000 genomes]
rs2733318	0.84[EUR][1000 genomes]
rs2915176	0.81[EUR][1000 genomes]
rs2920268	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2920270	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2920272	0.81[EUR][1000 genomes]
rs2951896	0.81[ASN][1000 genomes]
rs2951900	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2951902	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2957573	0.81[EUR][1000 genomes]
rs2957576	0.81[EUR][1000 genomes]
rs2957578	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2957592	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2962994	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2962995	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3794617	0.91[EUR][1000 genomes]
rs55886927	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56151428	0.91[EUR][1000 genomes]
rs7165729	0.85[EUR][1000 genomes]
rs7167268	0.85[EUR][1000 genomes]
rs7180513	0.84[EUR][1000 genomes]
rs7182188	0.83[EUR][1000 genomes]
rs7183392	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72731924	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72731958	0.90[EUR][1000 genomes]
rs72731960	0.81[EUR][1000 genomes]
rs72731964	0.89[EUR][1000 genomes]
rs72731970	0.89[EUR][1000 genomes]
rs72731974	0.91[EUR][1000 genomes]
rs72731986	0.83[EUR][1000 genomes]
rs72749491	0.80[EUR][1000 genomes]
rs734033	0.87[EUR][1000 genomes]
rs7359192	0.80[EUR][1000 genomes]
rs8029445	0.80[EUR][1000 genomes]
rs8042190	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9806712	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57374800-57414600	Weak transcription	Fetal Kidney	kidney
2	chr15:57381000-57412400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:57382600-57423800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:57382800-57419600	Weak transcription	K562	blood
5	chr15:57386400-57426600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr15:57386600-57424600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:57387000-57430000	Weak transcription	Placenta	Placenta
8	chr15:57387200-57425400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:57387600-57442400	Weak transcription	Fetal Intestine Large	intestine
10	chr15:57397800-57416600	Weak transcription	Fetal Stomach	stomach
11	chr15:57398000-57415800	Weak transcription	Fetal Intestine Small	intestine
12	chr15:57399400-57424600	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr15:57399600-57416200	Weak transcription	Primary T cells from cord blood	blood
14	chr15:57402600-57414600	Weak transcription	Primary B cells from cord blood	blood
15	chr15:57403000-57424600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr15:57403800-57425200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:57404600-57425000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:57404800-57415600	Weak transcription	Thymus	Thymus
19	chr15:57406800-57413000	Weak transcription	Gastric	stomach
20	chr15:57406800-57413000	Weak transcription	Left Ventricle	heart
21	chr15:57406800-57413000	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr15:57406800-57414200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr15:57406800-57414600	Weak transcription	Colon Smooth Muscle	Colon
24	chr15:57406800-57416200	Weak transcription	Fetal Muscle Leg	muscle
25	chr15:57406800-57425000	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr15:57406800-57425400	Weak transcription	Pancreas	Pancrea
27	chr15:57406800-57425600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr15:57406800-57425600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr15:57406800-57426400	Weak transcription	Colonic Mucosa	Colon
30	chr15:57406800-57426600	Weak transcription	Psoas Muscle	Psoas
31	chr15:57407000-57413600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr15:57407400-57412600	Enhancers	Brain Inferior Temporal Lobe	brain
33	chr15:57407400-57413200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr15:57407600-57425600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:57408200-57412800	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr15:57408200-57413200	Weak transcription	Small Intestine	intestine
37	chr15:57408400-57414400	Weak transcription	Stomach Mucosa	stomach
38	chr15:57409200-57414000	Enhancers	Brain Substantia Nigra	brain
39	chr15:57409400-57412200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:57409400-57412600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:57409400-57415600	Enhancers	Brain Hippocampus Middle	brain
42	chr15:57409600-57412800	Enhancers	Brain Angular Gyrus	brain
43	chr15:57409800-57412200	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr15:57409800-57412400	Enhancers	HUES64 Cell Line	embryonic stem cell
45	chr15:57410000-57411800	Enhancers	Primary hematopoietic stem cells	blood
46	chr15:57410000-57412600	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr15:57410200-57412000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr15:57410200-57412400	Enhancers	HUES6 Cell Line	embryonic stem cell
49	chr15:57410200-57414800	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr15:57410200-57415200	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links