Variant report

Variant	rs1367491
Chromosome Location	chr15:57317622-57317623
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57316485..57318733-chr15:57320688..57323136,2	K562	blood:
2	chr15:57315197..57318733-chr15:57320688..57324516,3	K562	blood:
3	chr15:57310993..57315176-chr15:57315668..57319705,4	K562	blood:

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs1015967	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10438332	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11071302	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11071307	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1139006	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11630965	0.87[EUR][1000 genomes]
rs11632502	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11632526	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11636655	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11856338	0.87[EUR][1000 genomes]
rs12148850	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12591367	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12595644	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12906025	0.81[EUR][1000 genomes]
rs1346880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1625176	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1628974	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1631079	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1642925	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1642927	0.93[EUR][1000 genomes]
rs1642928	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1642929	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1642935	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1642936	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1642937	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1642940	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1652732	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1652737	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1652738	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1652739	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1652740	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1652741	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1657926	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs169893	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17239222	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17819940	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1820996	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs190039	0.87[EUR][1000 genomes]
rs2111892	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2126402	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs213148	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs213152	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs213155	0.85[AMR][1000 genomes]
rs213160	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs213163	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs213166	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213168	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2169468	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2252289	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2435905	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2439921	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2439925	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2464427	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2464428	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2470080	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470083	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2470084	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2543675	0.81[EUR][1000 genomes]
rs2566840	0.84[AMR][1000 genomes]
rs2566844	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2566846	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2566856	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2585076	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2585116	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2703588	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2733187	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28637136	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2915176	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2920266	0.92[AMR][1000 genomes]
rs2920268	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2920270	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2920272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2951896	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2951897	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2951900	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2951902	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2957573	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957576	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957578	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2957592	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2962994	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2962995	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4774247	0.81[ASN][1000 genomes]
rs55886927	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7168945	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7183392	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731924	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72731934	0.81[EUR][1000 genomes]
rs72731964	0.80[AMR][1000 genomes]
rs72749478	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72749491	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7359192	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8029445	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8042190	0.80[ASN][1000 genomes]
rs9806712	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57307800-57323400	Weak transcription	Pancreas	Pancrea
2	chr15:57308000-57328000	Weak transcription	Gastric	stomach
3	chr15:57308800-57323400	Weak transcription	Small Intestine	intestine
4	chr15:57309200-57323400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:57309400-57323000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr15:57309400-57334600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:57309600-57323200	Weak transcription	Thymus	Thymus
8	chr15:57310800-57323400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:57311000-57347000	Weak transcription	Fetal Intestine Large	intestine
10	chr15:57312000-57318600	Weak transcription	Aorta	Aorta
11	chr15:57312400-57323000	Weak transcription	K562	blood
12	chr15:57312600-57317800	Weak transcription	Colon Smooth Muscle	Colon
13	chr15:57314000-57318200	Weak transcription	Brain Angular Gyrus	brain
14	chr15:57314200-57318000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:57315600-57319800	Weak transcription	Primary T cells from cord blood	blood
16	chr15:57315600-57328200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr15:57315600-57328600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:57315800-57323000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:57316000-57317800	Strong transcription	Fetal Thymus	thymus
20	chr15:57316000-57323400	Weak transcription	Primary B cells from cord blood	blood
21	chr15:57316200-57323000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr15:57316200-57323400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:57316200-57323400	Weak transcription	Fetal Muscle Leg	muscle
24	chr15:57316400-57324000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr15:57316400-57328200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:57316400-57345400	Weak transcription	Fetal Intestine Small	intestine
27	chr15:57316600-57327800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr15:57316800-57318200	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr15:57316800-57318200	Weak transcription	Right Ventricle	heart
30	chr15:57316800-57318400	Enhancers	Brain Germinal Matrix	brain
31	chr15:57316800-57318400	Flanking Active TSS	Hela-S3	cervix
32	chr15:57316800-57318600	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr15:57316800-57318600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr15:57317000-57317800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:57317000-57318800	Enhancers	Brain Hippocampus Middle	brain
36	chr15:57317000-57319000	Enhancers	Fetal Lung	lung
37	chr15:57317200-57317800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:57317200-57318000	Weak transcription	HepG2	liver
39	chr15:57317200-57318200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:57317200-57318400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:57317200-57318600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr15:57317200-57318600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:57317200-57318600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:57317200-57318600	Enhancers	HMEC	breast
45	chr15:57317400-57317800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr15:57317400-57318000	Enhancers	Ovary	ovary
47	chr15:57317400-57318000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr15:57317400-57318400	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr15:57317400-57318600	Enhancers	Muscle Satellite Cultured Cells	--
50	chr15:57317400-57318600	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links