Variant report

Variant	rs2543675
Chromosome Location	chr15:57241970-57241971
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57213053..57214861-chr15:57239551..57242181,2	K562	blood:

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1015967	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs10438332	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11071307	0.81[CEU][hapmap]
rs1139006	0.85[EUR][1000 genomes]
rs11630965	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11632502	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs11632526	0.85[EUR][1000 genomes]
rs11636655	0.82[CEU][hapmap]
rs11856338	0.95[CEU][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs12437976	1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12440219	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12591367	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs12595644	0.83[EUR][1000 genomes]
rs12902058	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs12906025	1.00[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes]
rs1346880	0.81[EUR][1000 genomes]
rs1367491	0.81[EUR][1000 genomes]
rs1625176	0.82[CEU][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes]
rs1628974	0.86[EUR][1000 genomes]
rs1631079	0.82[CEU][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs1642925	0.84[EUR][1000 genomes]
rs1642927	0.82[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1642928	0.86[EUR][1000 genomes]
rs1642929	0.84[CEU][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1642935	0.82[EUR][1000 genomes]
rs1642936	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1642937	0.82[EUR][1000 genomes]
rs1642940	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs1652732	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs1652737	0.83[EUR][1000 genomes]
rs1652738	0.82[CEU][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs1652739	0.82[CEU][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs1652740	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs1652741	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs1657926	0.82[CEU][hapmap]
rs17239222	0.82[CEU][hapmap]
rs17819940	0.82[CEU][hapmap];0.92[TSI][hapmap]
rs190039	0.82[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1963831	0.95[CEU][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.86[EUR][1000 genomes]
rs1975092	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2111890	0.95[CEU][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs2116067	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2116068	0.80[ASN][1000 genomes]
rs2126402	0.82[CEU][hapmap]
rs213148	0.85[EUR][1000 genomes]
rs213152	0.83[EUR][1000 genomes]
rs213155	0.95[CEU][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs213160	0.82[CEU][hapmap];0.90[EUR][1000 genomes]
rs213163	0.82[CEU][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes]
rs213166	0.82[CEU][hapmap];0.89[EUR][1000 genomes]
rs213168	0.82[CEU][hapmap];0.92[EUR][1000 genomes]
rs2163370	0.82[EUR][1000 genomes]
rs2169468	0.82[CEU][hapmap]
rs2252289	0.95[TSI][hapmap]
rs2435905	0.95[TSI][hapmap]
rs2439921	0.91[EUR][1000 genomes]
rs2439925	0.85[EUR][1000 genomes]
rs2464427	0.92[TSI][hapmap]
rs2470081	0.95[TSI][hapmap]
rs2566840	1.00[CEU][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2566844	0.82[CEU][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs2566846	0.85[EUR][1000 genomes]
rs2566856	0.95[TSI][hapmap]
rs2585076	0.86[CEU][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs2585116	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs2733187	0.95[TSI][hapmap]
rs28637136	0.80[EUR][1000 genomes]
rs2915176	0.81[EUR][1000 genomes]
rs2920270	0.82[CEU][hapmap]
rs2920272	0.81[EUR][1000 genomes]
rs2957573	0.81[EUR][1000 genomes]
rs2957576	0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs2957578	0.95[TSI][hapmap]
rs2957592	0.82[CEU][hapmap]
rs2962995	0.82[CEU][hapmap]
rs34373044	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4581646	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4774246	1.00[CEU][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.87[EUR][1000 genomes]
rs4774900	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7162730	0.88[EUR][1000 genomes]
rs7164742	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.90[TSI][hapmap];0.85[ASN][1000 genomes]
rs7168945	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs72749478	0.83[EUR][1000 genomes]
rs72749491	0.85[EUR][1000 genomes]
rs7359192	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs8029445	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs8031788	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8042190	0.82[CEU][hapmap]
rs9806712	0.85[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
2	chr15:57213200-57256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:57222600-57250200	Weak transcription	NH-A	brain
4	chr15:57222800-57255000	Weak transcription	HMEC	breast
5	chr15:57224600-57248600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:57225000-57244200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:57225000-57249000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr15:57226400-57242000	Weak transcription	HUVEC	blood vessel
9	chr15:57227000-57249800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr15:57227600-57260600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:57228000-57242400	Weak transcription	Fetal Intestine Small	intestine
12	chr15:57228200-57260600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:57229400-57255800	Weak transcription	Fetal Stomach	stomach
14	chr15:57232000-57256000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:57233000-57250200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr15:57233800-57242000	Weak transcription	Ovary	ovary
17	chr15:57234400-57249000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr15:57236800-57249800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:57237000-57242000	Weak transcription	Brain Anterior Caudate	brain
20	chr15:57238200-57249000	Weak transcription	HSMM	muscle
21	chr15:57238400-57242800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr15:57238400-57243400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:57238400-57247800	Weak transcription	NHDF-Ad	bronchial
24	chr15:57238400-57249000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr15:57238400-57256200	Weak transcription	K562	blood
26	chr15:57238600-57243200	Weak transcription	Primary B cells from peripheral blood	blood
27	chr15:57238600-57245000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr15:57238600-57248200	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr15:57238800-57244000	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr15:57238800-57244000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr15:57239000-57246400	Weak transcription	Fetal Intestine Large	intestine
32	chr15:57239400-57242200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr15:57239600-57242000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr15:57239600-57242200	Enhancers	Primary T cells from cord blood	blood
35	chr15:57239600-57250200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr15:57240200-57242000	Enhancers	Colon Smooth Muscle	Colon
37	chr15:57240200-57242000	Weak transcription	Thymus	Thymus
38	chr15:57240200-57242200	Weak transcription	Dnd41	blood
39	chr15:57240200-57243600	Strong transcription	Fetal Thymus	thymus
40	chr15:57240200-57249200	Weak transcription	Psoas Muscle	Psoas
41	chr15:57240200-57250200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr15:57240200-57250200	Weak transcription	Left Ventricle	heart
43	chr15:57240400-57242200	Enhancers	Brain Cingulate Gyrus	brain
44	chr15:57240400-57242200	Enhancers	A549	lung
45	chr15:57240400-57243200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr15:57240600-57242000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:57240600-57242200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:57240800-57242200	Enhancers	Brain Hippocampus Middle	brain
49	chr15:57241000-57242400	Enhancers	Hela-S3	cervix
50	chr15:57241000-57249000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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