Variant report

Variant	rs7168945
Chromosome Location	chr15:57304221-57304222
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1015967	0.82[CEU][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10438332	0.82[CEU][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11071302	0.81[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11071307	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs11071310	0.81[JPT][hapmap]
rs1139006	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11630965	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11632502	0.82[CEU][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11632526	0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11636655	0.82[CEU][hapmap];0.83[CHB][hapmap];0.81[JPT][hapmap]
rs11856338	0.95[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12148850	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12324235	0.81[JPT][hapmap]
rs12437976	1.00[CEU][hapmap]
rs12440219	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs12591367	0.82[CEU][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12593843	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs12595644	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12902058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12906025	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13313455	0.82[YRI][hapmap]
rs1346880	0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1367491	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1625176	0.81[CEU][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1628974	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1631079	0.81[CEU][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1642925	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1642927	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs1642928	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1642929	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs1642935	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1642936	0.82[CEU][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1642937	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1642940	0.85[CEU][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1652732	0.82[CEU][hapmap];0.88[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1652737	0.88[EUR][1000 genomes]
rs1652738	0.81[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1652739	0.81[CEU][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1652740	0.82[CEU][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1652741	0.82[CEU][hapmap];0.87[JPT][hapmap];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1657926	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs17239222	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs17819940	0.81[CEU][hapmap]
rs17820018	0.81[JPT][hapmap]
rs1820996	0.83[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1870870	0.80[JPT][hapmap]
rs190039	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs1963831	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1968399	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2111890	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2111892	0.83[AMR][1000 genomes]
rs2126402	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs213148	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs213155	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs213160	0.82[CEU][hapmap];0.87[JPT][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs213163	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs213166	0.82[CEU][hapmap];0.88[JPT][hapmap]
rs213168	0.82[CEU][hapmap];0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2163370	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2169468	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs2252289	0.82[CHB][hapmap]
rs2435905	0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2439921	0.82[EUR][1000 genomes]
rs2439925	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2464427	0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2464428	0.83[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2470080	0.83[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2470081	0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2470083	0.83[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2470084	0.83[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2543675	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2566840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2566844	0.81[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2566846	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2566856	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2585076	0.85[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2585116	0.82[CEU][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2593221	0.81[CEU][hapmap]
rs2703588	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs2703599	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs2703600	0.82[CEU][hapmap]
rs2733187	0.82[CHB][hapmap];0.82[AMR][1000 genomes]
rs2733309	0.80[JPT][hapmap]
rs28637136	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2915176	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2920268	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2920270	0.82[CEU][hapmap]
rs2920272	0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2951896	0.82[AMR][1000 genomes]
rs2951897	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2951900	0.83[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2951902	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs2957573	0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2957576	0.86[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2957578	0.82[CHB][hapmap]
rs2957592	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs2962994	0.87[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2962995	0.82[CEU][hapmap];0.82[CHB][hapmap]
rs3794617	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs4774245	0.83[YRI][hapmap]
rs4774246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4774247	0.97[ASN][1000 genomes]
rs55886927	0.88[EUR][1000 genomes]
rs7162730	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7164742	0.95[CEU][hapmap]
rs7182188	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs7183392	0.88[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72749478	0.88[EUR][1000 genomes]
rs72749491	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs734033	0.82[CEU][hapmap];0.81[CHB][hapmap]
rs7359192	0.82[CEU][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8029445	0.82[CEU][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8035485	0.85[YRI][hapmap]
rs8042190	0.82[CEU][hapmap]
rs9806712	0.85[CEU][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57269800-57304800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:57273000-57307200	Weak transcription	Fetal Intestine Small	intestine
3	chr15:57275400-57306200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr15:57276200-57313400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr15:57277000-57313400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:57282000-57307400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:57282000-57315000	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr15:57282200-57308400	Weak transcription	Thymus	Thymus
9	chr15:57282200-57311000	Weak transcription	K562	blood
10	chr15:57282200-57315200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:57282600-57306200	Weak transcription	HepG2	liver
12	chr15:57284200-57310800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr15:57286000-57306200	Weak transcription	Fetal Intestine Large	intestine
14	chr15:57286000-57307400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:57286200-57307600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr15:57286200-57307600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:57286200-57312000	Weak transcription	HSMM	muscle
18	chr15:57286200-57314800	Weak transcription	Dnd41	blood
19	chr15:57286400-57309400	Weak transcription	Fetal Lung	lung
20	chr15:57288800-57307400	Weak transcription	HMEC	breast
21	chr15:57289400-57304600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr15:57289400-57308000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr15:57289600-57315200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:57289600-57315600	Weak transcription	Fetal Muscle Leg	muscle
25	chr15:57289800-57315600	Weak transcription	Primary B cells from cord blood	blood
26	chr15:57294200-57307400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:57294400-57311600	Weak transcription	GM12878-XiMat	blood
28	chr15:57295200-57313600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr15:57296000-57307600	Weak transcription	Brain Substantia Nigra	brain
30	chr15:57296000-57308800	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:57296000-57308800	Weak transcription	Brain Hippocampus Middle	brain
32	chr15:57296200-57304600	Weak transcription	Brain Anterior Caudate	brain
33	chr15:57296200-57307400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr15:57296200-57307600	Weak transcription	A549	lung
35	chr15:57296200-57308000	Weak transcription	NH-A	brain
36	chr15:57296400-57309400	Weak transcription	NHDF-Ad	bronchial
37	chr15:57296400-57310200	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr15:57296600-57313200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:57297200-57308000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr15:57297200-57316800	Weak transcription	Fetal Stomach	stomach
41	chr15:57297800-57307200	Weak transcription	Pancreas	Pancrea
42	chr15:57298200-57307600	Weak transcription	Gastric	stomach
43	chr15:57299000-57307600	Weak transcription	Ovary	ovary
44	chr15:57299200-57316000	Weak transcription	Right Ventricle	heart
45	chr15:57299200-57317200	Weak transcription	Esophagus	oesophagus
46	chr15:57300000-57308200	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr15:57300200-57308000	Weak transcription	Primary T cells from cord blood	blood
48	chr15:57300200-57313800	Strong transcription	Fetal Thymus	thymus
49	chr15:57300400-57307400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:57300400-57308800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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