Variant report

Variant	rs11630965
Chromosome Location	chr15:57255775-57255776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:57254284..57256820-chr15:57279086..57281932,2	K562	blood:
2	chr15:57253721..57256073-chr15:57262899..57264820,2	K562	blood:
3	chr15:57254985..57258076-chr15:57265765..57268821,3	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1015967	0.91[EUR][1000 genomes]
rs10438332	0.91[EUR][1000 genomes]
rs11071302	0.86[EUR][1000 genomes]
rs1139006	0.91[EUR][1000 genomes]
rs11632502	0.91[EUR][1000 genomes]
rs11632526	0.91[EUR][1000 genomes]
rs11856338	0.96[EUR][1000 genomes]
rs12148850	0.86[EUR][1000 genomes]
rs12437976	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12440219	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12591367	0.88[EUR][1000 genomes]
rs12595644	0.89[EUR][1000 genomes]
rs12902058	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12906025	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1346880	0.87[EUR][1000 genomes]
rs1367491	0.87[EUR][1000 genomes]
rs1625176	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1628974	0.92[EUR][1000 genomes]
rs1631079	0.91[EUR][1000 genomes]
rs1642925	0.90[EUR][1000 genomes]
rs1642927	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1642928	0.92[EUR][1000 genomes]
rs1642929	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1642935	0.88[EUR][1000 genomes]
rs1642936	0.88[EUR][1000 genomes]
rs1642937	0.88[EUR][1000 genomes]
rs1642940	0.89[EUR][1000 genomes]
rs1652732	0.90[EUR][1000 genomes]
rs1652737	0.89[EUR][1000 genomes]
rs1652738	0.91[EUR][1000 genomes]
rs1652739	0.91[EUR][1000 genomes]
rs1652740	0.90[EUR][1000 genomes]
rs1652741	0.89[EUR][1000 genomes]
rs1820996	0.84[EUR][1000 genomes]
rs190039	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1975092	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2111890	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2111892	0.82[EUR][1000 genomes]
rs2116067	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2116068	0.81[ASN][1000 genomes]
rs213148	0.88[EUR][1000 genomes]
rs213155	0.80[EUR][1000 genomes]
rs213160	0.84[EUR][1000 genomes]
rs213166	0.83[EUR][1000 genomes]
rs213168	0.86[EUR][1000 genomes]
rs2435905	0.86[EUR][1000 genomes]
rs2439921	0.85[EUR][1000 genomes]
rs2439925	0.91[EUR][1000 genomes]
rs2470080	0.84[EUR][1000 genomes]
rs2470081	0.84[EUR][1000 genomes]
rs2470083	0.84[EUR][1000 genomes]
rs2470084	0.82[EUR][1000 genomes]
rs2543675	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2566840	0.84[EUR][1000 genomes]
rs2566844	0.91[EUR][1000 genomes]
rs2566846	0.91[EUR][1000 genomes]
rs2566856	0.84[EUR][1000 genomes]
rs2585076	0.91[EUR][1000 genomes]
rs2585116	0.91[EUR][1000 genomes]
rs28637136	0.86[EUR][1000 genomes]
rs2915176	0.86[EUR][1000 genomes]
rs2920272	0.87[EUR][1000 genomes]
rs2951900	0.84[EUR][1000 genomes]
rs2957573	0.87[EUR][1000 genomes]
rs2957576	0.87[EUR][1000 genomes]
rs2962994	0.80[EUR][1000 genomes]
rs34373044	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4581646	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4774246	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4774247	0.81[EUR][1000 genomes]
rs4774900	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs55886927	0.84[EUR][1000 genomes]
rs7162730	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7164742	0.86[ASN][1000 genomes]
rs7168945	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7183392	0.86[EUR][1000 genomes]
rs72749478	0.89[EUR][1000 genomes]
rs72749491	0.91[EUR][1000 genomes]
rs7359192	0.91[EUR][1000 genomes]
rs8029445	0.88[EUR][1000 genomes]
rs8031788	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9806712	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv904250	chr15:57225766-57294085	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1052052	chr15:57232111-57344561	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv542394	chr15:57232111-57344561	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
2	chr15:57213200-57256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:57227600-57260600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:57228200-57260600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr15:57229400-57255800	Weak transcription	Fetal Stomach	stomach
6	chr15:57232000-57256000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr15:57238400-57256200	Weak transcription	K562	blood
8	chr15:57242200-57256000	Weak transcription	Ovary	ovary
9	chr15:57244000-57255800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr15:57244200-57257800	Weak transcription	Fetal Intestine Small	intestine
11	chr15:57246800-57256000	Weak transcription	Gastric	stomach
12	chr15:57249400-57256000	Weak transcription	Aorta	Aorta
13	chr15:57250000-57256200	Weak transcription	Primary B cells from cord blood	blood
14	chr15:57250600-57256000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:57251000-57256000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr15:57251000-57256000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr15:57251000-57256000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr15:57251000-57256000	Weak transcription	Right Ventricle	heart
19	chr15:57251000-57259200	Weak transcription	Right Atrium	heart
20	chr15:57251000-57260600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr15:57251000-57261000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr15:57251800-57255800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr15:57251800-57256000	Weak transcription	Left Ventricle	heart
24	chr15:57251800-57256000	Weak transcription	NHEK	skin
25	chr15:57251800-57256200	Weak transcription	HSMM	muscle
26	chr15:57251800-57260800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr15:57252400-57256000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:57252600-57256200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:57253000-57256000	Weak transcription	Psoas Muscle	Psoas
30	chr15:57253400-57256800	Enhancers	Dnd41	blood
31	chr15:57253800-57259000	Enhancers	A549	lung
32	chr15:57254200-57258000	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr15:57254400-57256200	Enhancers	ES-I3 Cell Line	embryonic stem cell
34	chr15:57254400-57256200	Enhancers	Fetal Brain Male	brain
35	chr15:57254400-57256200	Enhancers	NHLF	lung
36	chr15:57254400-57256400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr15:57254400-57256600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr15:57254400-57256800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr15:57254400-57256800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr15:57254400-57256800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr15:57254400-57256800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr15:57254400-57257000	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr15:57254400-57257000	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr15:57254400-57257000	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr15:57254400-57259000	Enhancers	Brain Substantia Nigra	brain
46	chr15:57254400-57259000	Enhancers	HepG2	liver
47	chr15:57254600-57255800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr15:57254600-57256000	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr15:57254600-57256400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
50	chr15:57254600-57256800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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