Variant report

Variant	rs1657926
Chromosome Location	chr15:57199592-57199593
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57197545..57200478-chr15:57209928..57211970,2	K562	blood:

Variant related genes	Relation type
ENSG00000140262	Chromatin interaction
ENSG00000137871	Chromatin interaction

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs1015967	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10438332	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11071302	0.95[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.88[ASN][1000 genomes]
rs1139006	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11632502	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11632526	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11856338	0.93[JPT][hapmap]
rs12148850	0.89[ASN][1000 genomes]
rs12437976	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs12440219	0.83[EUR][1000 genomes]
rs12591367	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12595644	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12902058	0.82[CEU][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12906025	0.82[CEU][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes]
rs1346880	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1367491	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1625176	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1628974	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1631079	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1642925	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1642927	1.00[CEU][hapmap]
rs1642928	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1642929	1.00[CEU][hapmap]
rs1642935	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1642936	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1642937	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1642940	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1652732	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1652737	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1652738	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1652739	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1652740	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1652741	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs169893	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17239222	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap]
rs1820996	0.95[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs190039	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1963831	0.84[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1968399	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1975092	0.90[EUR][1000 genomes]
rs2111890	0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2111892	0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2116067	0.89[EUR][1000 genomes]
rs2116068	0.82[EUR][1000 genomes]
rs2126402	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs213148	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs213152	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs213155	0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs213160	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs213163	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs213166	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs213168	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2163370	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2169468	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs2252289	0.95[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs2435905	0.90[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2439921	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2439925	0.87[ASN][1000 genomes]
rs2464427	0.95[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs2464428	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes]
rs2470080	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2470081	0.95[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2470083	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2470084	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs2470085	1.00[YRI][hapmap]
rs2543675	0.82[CEU][hapmap]
rs2566840	0.82[CEU][hapmap];0.86[JPT][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2566844	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2566846	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2566856	0.95[CEU][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs2585076	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2585116	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2703588	0.95[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs2733187	0.95[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs2915176	0.88[AMR][1000 genomes]
rs2920266	0.81[AMR][1000 genomes]
rs2920268	0.88[AMR][1000 genomes]
rs2920270	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs2920272	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2951896	0.85[AMR][1000 genomes]
rs2951897	0.83[AMR][1000 genomes]
rs2951900	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2951902	0.95[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs2957573	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2957576	0.95[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2957578	0.95[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs2957592	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs2962988	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs2962994	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs2962995	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs34373044	0.91[EUR][1000 genomes]
rs4581646	0.90[EUR][1000 genomes]
rs4774246	0.82[CEU][hapmap];0.86[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4774900	0.88[EUR][1000 genomes]
rs7162730	0.83[EUR][1000 genomes]
rs7168945	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs7183392	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs72749478	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs72749491	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7359192	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8023315	1.00[YRI][hapmap]
rs8029445	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8031788	0.87[EUR][1000 genomes]
rs9806712	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57180200-57208000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:57181600-57204000	Weak transcription	Thymus	Thymus
3	chr15:57182000-57209200	Weak transcription	Fetal Stomach	stomach
4	chr15:57182600-57204200	Weak transcription	Fetal Thymus	thymus
5	chr15:57191800-57208000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr15:57194400-57208600	Weak transcription	Left Ventricle	heart
7	chr15:57196000-57205800	Weak transcription	HSMMtube	muscle
8	chr15:57196200-57207800	Weak transcription	Fetal Brain Female	brain
9	chr15:57197600-57207200	Weak transcription	Fetal Muscle Leg	muscle
10	chr15:57198800-57199600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:57199000-57199600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:57199000-57199600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr15:57199000-57199600	Enhancers	Small Intestine	intestine
14	chr15:57199000-57199800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
15	chr15:57199000-57200000	Flanking Active TSS	NHEK	skin
16	chr15:57199000-57200200	Enhancers	Primary B cells from cord blood	blood
17	chr15:57199000-57200400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr15:57199000-57209000	Weak transcription	Brain Germinal Matrix	brain
19	chr15:57199200-57199600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr15:57199200-57199600	Enhancers	Primary B cells from peripheral blood	blood
21	chr15:57199200-57199600	Active TSS	Primary T cells fromperipheralblood	blood
22	chr15:57199200-57199600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
23	chr15:57199200-57199600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr15:57199200-57199600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr15:57199200-57199600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:57199200-57199600	Flanking Active TSS	Duodenum Mucosa	Duodenum
27	chr15:57199200-57199600	Enhancers	Psoas Muscle	Psoas
28	chr15:57199200-57199600	Flanking Active TSS	GM12878-XiMat	blood
29	chr15:57199200-57199800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr15:57199200-57200000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
31	chr15:57199200-57200000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr15:57199200-57200000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr15:57199200-57200000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:57199200-57200000	Active TSS	Rectal Mucosa Donor 29	rectum
35	chr15:57199200-57200200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr15:57199200-57209000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr15:57199400-57199600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
38	chr15:57199400-57199600	Enhancers	Brain Hippocampus Middle	brain
39	chr15:57199400-57199600	Active TSS	Stomach Mucosa	stomach
40	chr15:57199400-57199800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:57199400-57199800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
42	chr15:57199400-57199800	Enhancers	NHDF-Ad	bronchial
43	chr15:57199400-57200000	Enhancers	Primary hematopoietic stem cells	blood
44	chr15:57199400-57200000	Active TSS	Colon Smooth Muscle	Colon
45	chr15:57199400-57200000	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr15:57199400-57200000	Active TSS	HMEC	breast
47	chr15:57199400-57200200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr15:57199400-57200200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:57199400-57200200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:57199400-57200200	Enhancers	Liver	Liver

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