Variant report

Variant	rs213152
Chromosome Location	chr15:57213571-57213572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:57213398-57214039	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57213053..57214861-chr15:57239551..57242181,2	K562	blood:
2	chr15:57212275..57213860-chr15:57281190..57283282,2	K562	blood:

Variant related genes	Relation type
ZNF280D	TF binding region

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1015967	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10438332	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11071302	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1139006	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11632502	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11632526	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12148850	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12437976	0.90[EUR][1000 genomes]
rs12440219	0.91[EUR][1000 genomes]
rs12591367	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12595644	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12902058	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12906025	0.83[EUR][1000 genomes]
rs1346880	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1367491	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1625176	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1628974	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1631079	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1642925	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1642927	0.83[EUR][1000 genomes]
rs1642928	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1642929	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1642935	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1642936	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1642937	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1642940	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1652732	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1652737	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1652738	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1652739	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1652740	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1652741	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1657926	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs169893	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1820996	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs190039	0.89[EUR][1000 genomes]
rs1963831	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1975092	0.85[EUR][1000 genomes]
rs2111890	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2111892	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2116067	0.83[EUR][1000 genomes]
rs2126402	0.86[AMR][1000 genomes]
rs213148	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs213155	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs213160	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213163	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213166	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs213168	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2163370	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2169468	0.86[AMR][1000 genomes]
rs2252289	0.88[AMR][1000 genomes]
rs2435905	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2439921	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2439925	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2464427	0.91[AMR][1000 genomes]
rs2464428	0.91[AMR][1000 genomes]
rs2470080	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2470081	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2470083	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2470084	0.90[AMR][1000 genomes]
rs2543675	0.83[EUR][1000 genomes]
rs2566840	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2566844	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2566846	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2566856	0.90[AMR][1000 genomes]
rs2585076	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2585116	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2703588	0.86[AMR][1000 genomes]
rs2733187	0.88[AMR][1000 genomes]
rs2915176	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2920266	0.84[AMR][1000 genomes]
rs2920268	0.91[AMR][1000 genomes]
rs2920270	0.85[AMR][1000 genomes]
rs2920272	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2951896	0.88[AMR][1000 genomes]
rs2951897	0.87[AMR][1000 genomes]
rs2951900	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2951902	0.87[AMR][1000 genomes]
rs2957573	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2957576	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2957578	0.88[AMR][1000 genomes]
rs2957592	0.86[AMR][1000 genomes]
rs2962994	0.90[AMR][1000 genomes]
rs2962995	0.86[AMR][1000 genomes]
rs34373044	0.86[EUR][1000 genomes]
rs4581646	0.84[EUR][1000 genomes]
rs4774246	0.87[EUR][1000 genomes]
rs4774900	0.88[EUR][1000 genomes]
rs7162730	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7183392	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72731924	0.86[AMR][1000 genomes]
rs72749478	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72749491	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7359192	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8029445	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8031788	0.90[EUR][1000 genomes]
rs9806712	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv833020	chr15:57055947-57216068	Enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57209400-57217200	Active TSS	Thymus	Thymus
2	chr15:57210200-57213600	Active TSS	K562	blood
3	chr15:57210400-57215600	Active TSS	Fetal Thymus	thymus
4	chr15:57211400-57216000	Transcr. at gene 5' and 3'	Dnd41	blood
5	chr15:57212400-57218200	Weak transcription	Small Intestine	intestine
6	chr15:57212400-57219000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:57212400-57222000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:57212400-57224800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:57212400-57224800	Weak transcription	Spleen	Spleen
10	chr15:57212400-57230400	Weak transcription	Lung	lung
11	chr15:57212400-57233400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
13	chr15:57212600-57213600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:57212600-57213600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr15:57212600-57213600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr15:57212600-57214800	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr15:57212600-57214800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:57212600-57215400	Weak transcription	Colonic Mucosa	Colon
19	chr15:57212600-57215600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:57212600-57218200	Weak transcription	Aorta	Aorta
21	chr15:57212600-57224000	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr15:57212600-57241000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr15:57212800-57213600	Enhancers	Fetal Intestine Small	intestine
24	chr15:57212800-57213600	Weak transcription	Placenta	Placenta
25	chr15:57212800-57214200	Weak transcription	HSMM	muscle
26	chr15:57212800-57215200	Weak transcription	Stomach Mucosa	stomach
27	chr15:57212800-57218200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr15:57212800-57218600	Weak transcription	Fetal Stomach	stomach
29	chr15:57212800-57219200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr15:57212800-57220200	Weak transcription	Primary B cells from peripheral blood	blood
31	chr15:57212800-57220600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr15:57212800-57222200	Weak transcription	Left Ventricle	heart
33	chr15:57212800-57222200	Weak transcription	Psoas Muscle	Psoas
34	chr15:57212800-57222200	Weak transcription	Right Ventricle	heart
35	chr15:57212800-57222400	Weak transcription	Ovary	ovary
36	chr15:57212800-57224000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:57212800-57227200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr15:57213000-57214200	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr15:57213000-57214400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
40	chr15:57213000-57215200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr15:57213000-57215600	Weak transcription	Primary B cells from cord blood	blood
42	chr15:57213000-57216000	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr15:57213000-57216800	Weak transcription	Fetal Muscle Leg	muscle
44	chr15:57213000-57218600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr15:57213000-57219400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr15:57213000-57220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr15:57213000-57222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:57213000-57222400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr15:57213000-57227400	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr15:57213200-57213800	Strong transcription	HUES64 Cell Line	embryonic stem cell

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