Variant report

Variant	rs169893
Chromosome Location	chr15:57217731-57217732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57215422..57217856-chr15:57225443..57228595,3	K562	blood:

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs1015967	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10438332	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11071302	0.87[ASN][1000 genomes]
rs1139006	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11632502	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11632526	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11636655	0.88[AMR][1000 genomes]
rs12148850	0.88[ASN][1000 genomes]
rs12437976	0.86[EUR][1000 genomes]
rs12440219	0.88[EUR][1000 genomes]
rs12591367	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12595644	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12902058	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12906025	0.81[AMR][1000 genomes]
rs1346880	0.93[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1367491	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1625176	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1628974	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1631079	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1642925	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1642928	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1642929	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1642935	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1642936	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1642937	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1642940	0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1652732	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1652737	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1652738	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1652739	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1652740	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1652741	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1657926	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17239222	0.81[AMR][1000 genomes]
rs1820996	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs190039	0.86[EUR][1000 genomes]
rs1963831	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1975092	0.82[EUR][1000 genomes]
rs2111890	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2111892	0.95[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2116067	0.80[EUR][1000 genomes]
rs2126402	0.88[AMR][1000 genomes]
rs213148	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs213152	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213155	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs213160	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs213163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213166	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs213168	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2163370	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2169468	0.88[AMR][1000 genomes]
rs2252289	0.90[AMR][1000 genomes]
rs2435905	0.88[ASN][1000 genomes]
rs2439921	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2439925	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2464427	0.93[AMR][1000 genomes]
rs2464428	0.93[AMR][1000 genomes]
rs2470080	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2470081	0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2470083	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2470084	0.91[AMR][1000 genomes]
rs2566840	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2566844	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2566846	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2566856	0.91[AMR][1000 genomes]
rs2585076	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2585116	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2703588	0.88[AMR][1000 genomes]
rs2733187	0.90[AMR][1000 genomes]
rs2915176	0.93[AMR][1000 genomes]
rs2920266	0.85[AMR][1000 genomes]
rs2920268	0.93[AMR][1000 genomes]
rs2920270	0.86[AMR][1000 genomes]
rs2920272	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2951896	0.90[AMR][1000 genomes]
rs2951897	0.88[AMR][1000 genomes]
rs2951900	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2951902	0.88[AMR][1000 genomes]
rs2957573	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2957576	0.93[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2957578	0.90[AMR][1000 genomes]
rs2957592	0.88[AMR][1000 genomes]
rs2962994	0.91[AMR][1000 genomes]
rs2962995	0.88[AMR][1000 genomes]
rs34373044	0.82[EUR][1000 genomes]
rs4581646	0.81[EUR][1000 genomes]
rs4774246	0.84[EUR][1000 genomes]
rs4774900	0.85[EUR][1000 genomes]
rs7162730	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7183392	0.88[ASN][1000 genomes]
rs72731924	0.88[AMR][1000 genomes]
rs72749478	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72749491	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7359192	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8029445	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8031788	0.86[EUR][1000 genomes]
rs9806712	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv457162	chr15:57083006-57225766	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv569577	chr15:57083006-57225766	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1042486	chr15:57094598-57505992	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv542393	chr15:57115116-57341363	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57212400-57218200	Weak transcription	Small Intestine	intestine
2	chr15:57212400-57219000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:57212400-57222000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr15:57212400-57224800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:57212400-57224800	Weak transcription	Spleen	Spleen
6	chr15:57212400-57230400	Weak transcription	Lung	lung
7	chr15:57212400-57233400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:57212400-57256000	Weak transcription	Pancreas	Pancrea
9	chr15:57212600-57218200	Weak transcription	Aorta	Aorta
10	chr15:57212600-57224000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr15:57212600-57241000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:57212800-57218200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:57212800-57218600	Weak transcription	Fetal Stomach	stomach
14	chr15:57212800-57219200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:57212800-57220200	Weak transcription	Primary B cells from peripheral blood	blood
16	chr15:57212800-57220600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr15:57212800-57222200	Weak transcription	Left Ventricle	heart
18	chr15:57212800-57222200	Weak transcription	Psoas Muscle	Psoas
19	chr15:57212800-57222200	Weak transcription	Right Ventricle	heart
20	chr15:57212800-57222400	Weak transcription	Ovary	ovary
21	chr15:57212800-57224000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr15:57212800-57227200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr15:57213000-57218600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr15:57213000-57219400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:57213000-57220800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr15:57213000-57222200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:57213000-57222400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr15:57213000-57227400	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr15:57213200-57218600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:57213200-57218600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr15:57213200-57221000	Weak transcription	Adipose Nuclei	Adipose
32	chr15:57213200-57221200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr15:57213200-57223400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr15:57213200-57256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr15:57213400-57218200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:57213400-57219000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr15:57213400-57219000	Weak transcription	HSMMtube	muscle
38	chr15:57213400-57220200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:57213400-57220200	Weak transcription	NHEK	skin
40	chr15:57213400-57223200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:57213400-57226800	Weak transcription	Brain Germinal Matrix	brain
42	chr15:57213600-57218200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr15:57213600-57218200	Strong transcription	Placenta	Placenta
44	chr15:57213600-57219000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:57214000-57219400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:57214200-57218600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:57214200-57218800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:57214200-57220800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:57214400-57218200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr15:57214400-57219200	Strong transcription	NH-A	brain

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