Variant report

Variant	rs72805672
Chromosome Location	chr2:56010434-56010435
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17047221	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17047224	0.82[EUR][1000 genomes]
rs2052932	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55780112	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56245786	0.83[EUR][1000 genomes]
rs72797603	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72805664	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72805667	0.82[EUR][1000 genomes]
rs72805677	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72807711	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72807717	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72807719	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72807730	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72807732	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72807737	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72807752	0.91[EUR][1000 genomes]
rs72807756	0.91[EUR][1000 genomes]
rs72807759	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv999962	chr2:55976574-56011517	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv997683	chr2:55976574-56013875	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv431080	chr2:55988293-56011517	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55989400-56015000	Weak transcription	Aorta	Aorta
2	chr2:56009400-56010600	Enhancers	A549	lung
3	chr2:56009600-56010800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr2:56009800-56011600	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:56010000-56010600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:56010000-56010600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:56010200-56012800	Weak transcription	Brain Anterior Caudate	brain
8	chr2:56010400-56010600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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