Variant report

Variant	rs72807732
Chromosome Location	chr2:56065749-56065750
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56006332..56008999-chr2:56065171..56067853,3	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2052932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780112	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56245786	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72805672	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72805677	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807726	0.94[ASN][1000 genomes]
rs72807730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807737	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807752	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72807756	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72807759	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56055000-56066000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:56064000-56067200	Enhancers	Stomach Mucosa	stomach
3	chr2:56064200-56069400	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:56064600-56065800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:56064600-56065800	Weak transcription	Fetal Intestine Large	intestine
6	chr2:56064600-56066000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:56064600-56066000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:56064600-56066000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr2:56064600-56066000	Weak transcription	Fetal Intestine Small	intestine
10	chr2:56064600-56066200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr2:56064600-56067200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr2:56064800-56065800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr2:56064800-56065800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr2:56064800-56065800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr2:56064800-56066000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr2:56064800-56066000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr2:56064800-56066000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr2:56064800-56066000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr2:56064800-56066600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:56064800-56067400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:56064800-56068800	Weak transcription	Gastric	stomach
22	chr2:56064800-56070200	Weak transcription	K562	blood
23	chr2:56065000-56066000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr2:56065000-56066400	Weak transcription	Placenta	Placenta
25	chr2:56065000-56066600	Weak transcription	Pancreas	Pancrea
26	chr2:56065400-56065800	Enhancers	A549	lung
27	chr2:56065400-56066000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr2:56065400-56066000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr2:56065400-56066000	Enhancers	HMEC	breast
30	chr2:56065600-56066000	Enhancers	NHEK	skin
31	chr2:56065600-56067400	Enhancers	Fetal Lung	lung

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