Variant report

Variant	rs72807756
Chromosome Location	chr2:56084986-56084987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56081136..56083085-chr2:56083117..56085242,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs2052932	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55780112	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56245786	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72805672	0.91[EUR][1000 genomes]
rs72805677	0.95[EUR][1000 genomes]
rs72807711	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72807717	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72807719	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72807730	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72807732	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72807737	0.91[EUR][1000 genomes]
rs72807752	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807759	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807766	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56071600-56086800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:56079000-56088600	Weak transcription	Fetal Lung	lung
3	chr2:56082400-56085400	Enhancers	HMEC	breast
4	chr2:56082600-56085200	Enhancers	Hela-S3	cervix
5	chr2:56082600-56085400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:56082600-56086000	Enhancers	NHEK	skin
7	chr2:56082600-56086400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr2:56082800-56085600	Enhancers	Osteobl	bone
9	chr2:56083200-56088600	Weak transcription	Ovary	ovary
10	chr2:56083400-56088800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr2:56084000-56085000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr2:56084200-56085000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr2:56084200-56086000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr2:56084200-56086200	Enhancers	HUVEC	blood vessel
15	chr2:56084200-56088600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:56084400-56087000	Weak transcription	Placenta	Placenta
17	chr2:56084400-56088600	Weak transcription	Aorta	Aorta
18	chr2:56084600-56085200	Enhancers	A549	lung
19	chr2:56084600-56086000	Weak transcription	HSMM	muscle
20	chr2:56084600-56087800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr2:56084600-56087800	Weak transcription	NHLF	lung
22	chr2:56084600-56088600	Weak transcription	NH-A	brain
23	chr2:56084800-56088600	Weak transcription	Adipose Nuclei	Adipose

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