Variant report

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2052932	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55780112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56245786	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72805672	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72805677	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807711	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807717	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807719	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807726	0.94[ASN][1000 genomes]
rs72807732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807737	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72807742	1.00[AFR][1000 genomes]
rs72807752	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72807756	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72807759	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56055000-56066000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:56064000-56064200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr2:56064000-56064200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr2:56064000-56064400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr2:56064000-56064400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:56064000-56064600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr2:56064000-56064600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr2:56064000-56064600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr2:56064000-56064600	Enhancers	Fetal Intestine Large	intestine
10	chr2:56064000-56064600	Flanking Bivalent TSS/Enh	HepG2	liver
11	chr2:56064000-56064800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr2:56064000-56064800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr2:56064000-56064800	Enhancers	H9 Cell Line	embryonic stem cell
14	chr2:56064000-56064800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:56064000-56064800	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr2:56064000-56064800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr2:56064000-56064800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr2:56064000-56064800	Enhancers	K562	blood
19	chr2:56064000-56065000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr2:56064000-56067200	Enhancers	Stomach Mucosa	stomach

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