Variant report

Variant	rs72807766
Chromosome Location	chr2:56095268-56095269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56088294..56090507-chr2:56095007..56097587,2	K562	blood:
2	chr2:56094233..56095750-chr2:56109550..56111256,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs3791678	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55818621	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55990801	0.86[EUR][1000 genomes]
rs59265286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72805677	1.00[AMR][1000 genomes]
rs72807752	1.00[ASN][1000 genomes]
rs72807753	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72807756	1.00[ASN][1000 genomes]
rs72807759	1.00[ASN][1000 genomes]
rs72807767	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72807770	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72807773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72807774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72807775	1.00[AMR][1000 genomes]
rs72811708	1.00[AMR][1000 genomes]
rs72811720	1.00[AMR][1000 genomes]
rs72811729	1.00[AMR][1000 genomes]
rs72811739	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56089200-56097000	Weak transcription	Lung	lung
2	chr2:56089200-56112200	Weak transcription	Pancreas	Pancrea
3	chr2:56089400-56097000	Weak transcription	Right Atrium	heart
4	chr2:56089600-56097000	Weak transcription	HSMMtube	muscle
5	chr2:56089800-56098000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr2:56090000-56107600	Weak transcription	Fetal Stomach	stomach
7	chr2:56090200-56107400	Weak transcription	Fetal Lung	lung
8	chr2:56091200-56102600	Weak transcription	Hela-S3	cervix
9	chr2:56092000-56099200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:56092400-56100000	Genic enhancers	Osteobl	bone
11	chr2:56092400-56111600	Genic enhancers	HUVEC	blood vessel
12	chr2:56092600-56102600	Strong transcription	HSMM	muscle
13	chr2:56092800-56107800	Weak transcription	Brain Anterior Caudate	brain
14	chr2:56092800-56112400	Weak transcription	Stomach Smooth Muscle	stomach
15	chr2:56092800-56114400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr2:56093000-56097200	Weak transcription	NH-A	brain
17	chr2:56093000-56097600	Weak transcription	NHLF	lung
18	chr2:56093000-56098600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:56093200-56096200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:56093600-56096600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr2:56093800-56109000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:56094000-56095800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr2:56094200-56095400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr2:56094200-56095800	Strong transcription	HMEC	breast
25	chr2:56094200-56096000	Enhancers	Ovary	ovary
26	chr2:56094200-56096000	Strong transcription	NHEK	skin
27	chr2:56094800-56095600	Strong transcription	Adipose Nuclei	Adipose
28	chr2:56094800-56095600	Enhancers	NHDF-Ad	bronchial
29	chr2:56094800-56096200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr2:56094800-56116200	Weak transcription	Spleen	Spleen
31	chr2:56095000-56102600	Weak transcription	A549	lung
32	chr2:56095200-56095400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr2:56095200-56095600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr2:56095200-56095600	Strong transcription	Aorta	Aorta
35	chr2:56095200-56096000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:56095200-56097600	Weak transcription	Placenta	Placenta

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