Variant report

Variant	rs72811708
Chromosome Location	chr2:56139925-56139926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56126184..56127742-chr2:56139330..56142090,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs3791678	1.00[AMR][1000 genomes]
rs55818621	1.00[AMR][1000 genomes]
rs55832400	1.00[AMR][1000 genomes]
rs55990801	0.85[EUR][1000 genomes]
rs56120846	1.00[AFR][1000 genomes]
rs59265286	1.00[AMR][1000 genomes]
rs72805677	1.00[AMR][1000 genomes]
rs72807753	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72807766	1.00[AMR][1000 genomes]
rs72807767	1.00[AMR][1000 genomes]
rs72807770	1.00[AMR][1000 genomes]
rs72807773	1.00[AMR][1000 genomes]
rs72807774	1.00[AMR][1000 genomes]
rs72807775	1.00[AMR][1000 genomes]
rs72811720	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72811721	1.00[AFR][1000 genomes]
rs72811729	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72811739	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56116400-56144400	Weak transcription	Lung	lung
2	chr2:56129000-56144200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr2:56129000-56144400	Weak transcription	HSMMtube	muscle
4	chr2:56129200-56142400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:56129200-56150200	Weak transcription	Pancreas	Pancrea
6	chr2:56129400-56143000	Weak transcription	NHLF	lung
7	chr2:56132000-56149000	Weak transcription	Colon Smooth Muscle	Colon
8	chr2:56133800-56140800	Strong transcription	HSMM	muscle
9	chr2:56135200-56142000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:56135200-56143600	Weak transcription	Adipose Nuclei	Adipose
11	chr2:56135200-56146600	Weak transcription	Brain Anterior Caudate	brain
12	chr2:56135400-56141000	Weak transcription	Aorta	Aorta
13	chr2:56135600-56140000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr2:56135600-56143000	Weak transcription	NHEK	skin
15	chr2:56136600-56145800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr2:56136800-56140000	Weak transcription	Ovary	ovary
17	chr2:56137000-56142000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:56137400-56149400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:56137800-56142200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:56138400-56144200	Weak transcription	NH-A	brain
21	chr2:56138600-56141800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:56138800-56140400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr2:56138800-56146400	Weak transcription	A549	lung
24	chr2:56138800-56149600	Transcr. at gene 5' and 3'	HUVEC	blood vessel
25	chr2:56139000-56140200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:56139000-56143600	Weak transcription	HMEC	breast
27	chr2:56139200-56140000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr2:56139400-56140400	Genic enhancers	Osteobl	bone

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